Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K06
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    88   4e-18
02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...    87   8e-18
08_02_1053 - 23968372-23968442,23969245-23969294,23970396-239704...    29   2.2  
02_02_0451 + 10387353-10387580,10387675-10387934,10388160-103884...    28   5.1  
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445...    28   6.7  
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    27   8.9  

>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 88.2 bits (209), Expect = 4e-18
 Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 5/122 (4%)
 Frame = +2

Query: 5   GSCEDVMP-----FARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQ 169
           GSC +++P     F R+VE GRVALV+ G   G+LV +VD++DQ RAL+D P   + R Q
Sbjct: 3   GSCREILPVVSSPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQ 60

Query: 170 IRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQITDYQR 349
           I   +L LT  ++          + KA  +A +  KW  S W +KL  +++RA + D+ R
Sbjct: 61  INFKRLSLTDIKIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDR 120

Query: 350 IQ 355
            +
Sbjct: 121 FK 122


>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score = 87.4 bits (207), Expect = 8e-18
 Identities = 44/111 (39%), Positives = 65/111 (58%)
 Frame = +2

Query: 23  MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 202
           MPF R+VE GRVALV+ G   G+LV +VD++DQ RAL+D P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDI 58

Query: 203 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQITDYQRIQ 355
           ++          + KA  +A +  KW  S W +KL  +++RA + D+ R +
Sbjct: 59  KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFK 109


>08_02_1053 -
           23968372-23968442,23969245-23969294,23970396-23970457,
           23970527-23970709,23970737-23970901,23972235-23972408
          Length = 234

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 523 NSFVPESSVK*LGQIKELLFSIKKKEKNS 609
           NS  P+S V+ + Q+K+    IKKKE NS
Sbjct: 89  NSTTPKSRVRQVKQVKDRFGKIKKKEANS 117


>02_02_0451 +
           10387353-10387580,10387675-10387934,10388160-10388484,
           10388819-10389061
          Length = 351

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
 Frame = +3

Query: 228 PHVLSEKRGQTLN*MKNGL-KANGHRN*QTKRREH----RLPTTNGFK-LTSARVKRNRA 389
           PH L    G T+  M NG+ ++  HR      +E      L + N  K +  A    +  
Sbjct: 259 PHTLLINLGDTMEVMCNGIFRSPVHRVVTNAEKERISLAMLYSVNDEKDIEPAAGLLDEN 318

Query: 390 RTAVFKSLKVKAARAGVFGKSKIPKSAVKKLR 485
           R A ++ + V+  RAG+FGK    +  +  LR
Sbjct: 319 RPARYRKVSVEEFRAGIFGKFSRGERYIDSLR 350


>12_01_0551 +
           4446937-4447353,4449141-4450013,4451206-4451244,
           4452339-4452581
          Length = 523

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 255 VHAFLTTRVGAVKGYFRRNFVKWSWLRR 172
           +H   T+R+G  + +FR   V + WLRR
Sbjct: 351 LHCTSTSRLGIFEAWFRPLLVDFGWLRR 378


>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 47   PGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGS 151
            P  VA  +DG L   ++G V  ID    L D PG+
Sbjct: 1159 PSTVAESTDGDLDNDMLGTVKSIDWNDELNDDPGA 1193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,138,119
Number of Sequences: 37544
Number of extensions: 290605
Number of successful extensions: 783
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)