Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K06
         (611 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)              66   3e-11
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   3.9  
SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.2  
SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)                   28   6.9  
SB_49814| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_32579| Best HMM Match : 7tm_1 (HMM E-Value=4e-15)                   27   9.1  
SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)                 27   9.1  
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                27   9.1  
SB_26456| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.00011)           27   9.1  

>SB_27757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 33/94 (35%), Positives = 55/94 (58%)
 Frame = +2

Query: 143 PGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEK 322
           P  GV RQ I +  L LT F++K   +A +  V+KA+  AQ+ +KW ++ WA+KLA ++K
Sbjct: 249 PHGGVCRQAINMKHLSLTDFKIKIGRSARSGPVKKAFEAAQVQDKWEQTAWARKLAMRKK 308

Query: 323 RAQITDYQRIQADVGPC*EESCKNSSV*KLEGES 424
           RA + D+ R +  +    +     + V KL+ E+
Sbjct: 309 RATLNDFDRFKLKLAKQKKNRLLRTEVKKLKKEA 342


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = +1

Query: 118  SNTRTY*RSRQW--CFAATNSPQPTPFNKIPPKIPFYS-THTCCQKSVDRRS 264
            S T  Y + R+W  C      P+P P  K  P  P Y  T   C K   RR+
Sbjct: 946  SLTNNYDKDRKWGYCRGYPPKPKPPPRPKPRPNTPIYHYTIVGCYKDKSRRA 997


>SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/69 (24%), Positives = 31/69 (44%)
 Frame = +2

Query: 137 DGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANK 316
           D  G G  R  + LN +H+    + Y       +V  + TDA+  + WA+ +W  K+   
Sbjct: 456 DVSGGGGDRNCVVLNDIHIDI--MDY-------IVPASCTDAEFRQMWAEFEWENKVTVN 506

Query: 317 EKRAQITDY 343
              + + +Y
Sbjct: 507 TNISDLREY 515


>SB_5414| Best HMM Match : WD40 (HMM E-Value=6.6e-15)
          Length = 490

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +1

Query: 436 VSSAKVKSPKAQLKSYARRNPTAKNQQRSNSFVPESSVK*LGQIKE 573
           VSS K +SP+  L+S+ +  P  KN  +    V E   K  GQ K+
Sbjct: 269 VSSPKCQSPQQLLRSWLKVTPPRKNSNKHMDDVREEGSK--GQKKQ 312


>SB_49814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +2

Query: 101 VVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRK 247
           ++D IDQ +  ID      S + +R+ Q +  K R    FTA T +++K
Sbjct: 95  IIDQIDQVQNQIDSLNEEASEEILRVEQKYNAKRRPH--FTARTNLIKK 141


>SB_32579| Best HMM Match : 7tm_1 (HMM E-Value=4e-15)
          Length = 357

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 24/89 (26%), Positives = 38/89 (42%)
 Frame = +2

Query: 20  VMPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTK 199
           ++P+  YV    V ++    LK  +  V D   +    + G  +GV    I L  +   +
Sbjct: 216 ILPYLAYVVYLTVMMI----LKPPVSYVTDFTVRYATAVAGYSNGVLNPVIYLIFMKDAR 271

Query: 200 FRLKYPFTAPTRVVRKAWTDAQLNEKWAK 286
            RLK  FT   RV R      +L + W+K
Sbjct: 272 ARLKGLFTRRQRVGRHHVAKERLQQTWSK 300


>SB_52289| Best HMM Match : SH3_1 (HMM E-Value=3.5e-13)
          Length = 803

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 219 KGYFRRNFVKWSWLRRICCRETPL 148
           KG F + FV W+     CCR  PL
Sbjct: 407 KGMFPKEFVDWNTFVIACCRFLPL 430


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 206  LKYPFTAPTRVVRKAWTDAQLNEKWAKS 289
            L++ FT PT+V R A    Q + +W KS
Sbjct: 1112 LEFQFTHPTKVTRVATQGRQDSAQWVKS 1139


>SB_26456| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.00011)
          Length = 343

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 279 HFSFS*ASVHAFLTTRVGAVKGYFRRNFVKWSW 181
           HF ++   V     T + AVK YFR +  K  W
Sbjct: 298 HFDYTDLIVSKISRTSIDAVKDYFREDLQKSDW 330


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,803,565
Number of Sequences: 59808
Number of extensions: 344625
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)