Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K06
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)            85   3e-17
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo...    85   5e-17
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila...    31   0.60 
At2g19970.1 68415.m02335 pathogenesis-related protein, putative ...    29   1.8  
At1g21990.1 68414.m02751 F-box family protein contains F-box dom...    29   3.2  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    28   4.2  
At4g33985.1 68417.m04822 expressed protein                             28   5.6  

>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
          Length = 134

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 45/111 (40%), Positives = 66/111 (59%)
 Frame = +2

Query: 23  MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 202
           M F R+VE GRVALV+ G   GKLV +VD++DQ RAL+D P   + R Q+ L +L LT  
Sbjct: 1   MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLTDI 58

Query: 203 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQITDYQRIQ 355
            +        +V+ +A   A +  KW KS W +KL  +++RA + D+ R +
Sbjct: 59  VIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFK 109


>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
           ribosomal protein L14 - Human,PIR3:JC5954
          Length = 134

 Score = 84.6 bits (200), Expect = 5e-17
 Identities = 44/111 (39%), Positives = 64/111 (57%)
 Frame = +2

Query: 23  MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 202
           M F RYVE GRVALV+ G   GKLV +VD++DQ RAL+D P   + R Q+   +L LT  
Sbjct: 1   MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLTDI 58

Query: 203 RLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWAQKLANKEKRAQITDYQRIQ 355
            +        + + +A   A +  KW KS W +KL  +++RA + D+ R +
Sbjct: 59  VIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFK 109


>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 841

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +2

Query: 26  PFARYVEPGRVALVSDGP--LKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTK 199
           P+   + P  + L  + P      L  + D+  + R   D  GS  SR   ++N +  T+
Sbjct: 634 PWPHQIPPIDIQLAKNCPPTSTSPLSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETR 693

Query: 200 FRLKYPFTAPTRVVRKAWTDAQLNEKWAKSQWA 298
           FRL      P+R V  A  D+  + K   + WA
Sbjct: 694 FRLPTHNQEPSRQV--ALDDSDSSSKNMTNFWA 724


>At2g19970.1 68415.m02335 pathogenesis-related protein, putative
           similar to pathogenesis-related protein 1 {Arabidopsis
           thaliana} GI:166805;  contains Pfam profile PF00188:
           SCP-like extracellular protein
          Length = 177

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 275 KWAKS--QWAQKLANKEKRAQITDYQRIQADVGP 370
           KW K+   +AQK AN++ +A + DY  ++   GP
Sbjct: 55  KWNKTVAAYAQKFANRQAKAGVCDYSSMRHSDGP 88


>At1g21990.1 68414.m02751 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 465

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 53  RVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLH 190
           ++ L  D P     +G  D +++T AL+D P S + +  +  + LH
Sbjct: 50  KLELTEDHPSGRCSLGFPDFVEKTLALLDRPCSVIKKVHLNCDHLH 95


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
           domain-containing protein similar to eukaryotic protein
           synthesis initiation factor [Homo sapiens] GI:3941724;
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 1544

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 219 LQHPHVLSEKRGQTLN*MKNGLKANGHRN*QTKRREHRLPTTNGFK 356
           ++ PH L+E RGQT   M + L ++        +    LP TNGF+
Sbjct: 447 VEPPHNLTENRGQT---MPDSLVSDPETATVAAKENLSLPATNGFR 489


>At4g33985.1 68417.m04822 expressed protein
          Length = 154

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +2

Query: 215 PFTAPTR--VVRKAWT-DAQLNEKWAKSQWAQKLANKEKRAQITD 340
           PF AP R  V + +W+ DA   E W + +  Q L    +   +TD
Sbjct: 7   PFQAPPRPLVKQHSWSPDADREEAWLRKKGKQSLGRLGRSKSVTD 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,436
Number of Sequences: 28952
Number of extensions: 236329
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)