BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_K04 (680 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 0.15 SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 2.5 SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 27 3.3 SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 27 3.3 SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 4.4 SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 26 4.4 SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 26 5.8 SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 7.7 SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.7 >SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizosaccharomyces pombe|chr 1|||Manual Length = 1403 Score = 31.1 bits (67), Expect = 0.15 Identities = 23/89 (25%), Positives = 39/89 (43%) Frame = -3 Query: 435 RSQEDLDNGISGNIGLNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGIKLAIV 256 R QED + G N+ G E + E ++ L F G+ + +S + I+ Sbjct: 1109 RCQEDFERGWKANLPSGKAGEAEIMSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIM 1168 Query: 255 KECD*FLNDNIIDFNADEMKFLLRIRLQV 169 EC L N+ D +E++ L R+ + V Sbjct: 1169 HECIKRLLGNVTDPEEEEIESLCRLLMTV 1197 >SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 796 Score = 27.1 bits (57), Expect = 2.5 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = +1 Query: 415 IKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKIT 522 + I L P ND + T WHKF++ WF +T Sbjct: 416 LHIELAPAANDIQWHNTYIGRWHKFFQ-GWFITLVT 450 >SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 451 Score = 26.6 bits (56), Expect = 3.3 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = +1 Query: 109 DPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 258 +P F Q Y IVG I + K + + +P+ K + I + V+E VT+ D Sbjct: 6 EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54 >SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pombe|chr 2|||Manual Length = 396 Score = 26.6 bits (56), Expect = 3.3 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = -3 Query: 183 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 46 I Q L+ + TH NPV EC +S+C L K G E L + F Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275 >SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1275 Score = 26.2 bits (55), Expect = 4.4 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%) Frame = +1 Query: 487 FYELDWFTHKITPGQNKIVRNSNE--FSLFKEDSLPFTDLMKLLD 615 F LDWFT+ + QN+++R S + F + L +KLL+ Sbjct: 654 FPTLDWFTNDSSVIQNELLRRSVDTYFRYIFQTDLKLEQRIKLLE 698 >SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 674 Score = 26.2 bits (55), Expect = 4.4 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 235 EKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTID-VXSDIATD 408 E++V + QF+A + T+K + + P K R+ RL F +D + D ATD Sbjct: 591 ERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR-RLEDGSFEEYLDYLFPDTATD 648 >SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 426 Score = 25.8 bits (54), Expect = 5.8 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +2 Query: 434 LSTTXMDSPSHWKKTGINSTNWIG 505 LS + S+W++T ++ TNW+G Sbjct: 208 LSVKAIIFASYWQQTVLSITNWLG 231 >SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizosaccharomyces pombe|chr 2|||Manual Length = 475 Score = 25.4 bits (53), Expect = 7.7 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +1 Query: 7 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 111 Y +ARH L + FD HTF + FY T RD Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216 >SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr 1|||Manual Length = 1854 Score = 25.4 bits (53), Expect = 7.7 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = -3 Query: 390 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 247 LN+ TE ++ ++ +V V S N FFG + G+ K ++ ++C Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,809,499 Number of Sequences: 5004 Number of extensions: 58086 Number of successful extensions: 171 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 163 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 171 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 313902888 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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