Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K04
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330     28   1.1  
03_03_0135 + 14748712-14748718,14748807-14748873,14748962-147490...    29   3.4  
01_01_0106 + 788967-789555,790139-790162,790339-791411                 28   6.0  
07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,380...    28   7.9  
04_04_0444 + 25270620-25273001                                         28   7.9  
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    28   7.9  
01_05_0548 + 23149271-23149568,23149766-23149845,23150137-231502...    28   7.9  

>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
          Length = 380

 Score = 27.9 bits (59), Expect(2) = 1.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 414 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 313
           NG +     +  G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257



 Score = 21.4 bits (43), Expect(2) = 1.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 282 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 190
           VSG ++A+  +    L+ N++  + DEM  L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328


>03_03_0135 +
           14748712-14748718,14748807-14748873,14748962-14749076,
           14749179-14749382,14749614-14749742,14749822-14749989,
           14750648-14750808,14751490-14751580,14752277-14752436,
           14752782-14752815,14753122-14753211,14754780-14754893,
           14755000-14755123,14755652-14755762,14756378-14756478,
           14756571-14756703
          Length = 602

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -1

Query: 668 SIWQAFKTFRHIQRTFPSSNNFMRSVNGKESSLKSENSFELRTILFCPGVILC 510
           SI  +F + R I R+FPS  NF+R  N K+ ++K +N    +    C G   C
Sbjct: 322 SIMTSFFSLRII-RSFPSGMNFLRHSN-KDLNMKWKNKRSNKLKNHCAGFASC 372


>01_01_0106 + 788967-789555,790139-790162,790339-791411
          Length = 561

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +1

Query: 346 PRLNHKPFSVTIDVXSDIATDA--VIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKI 519
           P L  + F V I   SD+ +    V+++  G +  D G      +N H+ Y L+W   K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490

Query: 520 TPGQNKIV 543
             GQN ++
Sbjct: 491 FTGQNLLI 498


>07_01_0511 + 3806475-3806876,3807914-3808039,3808120-3808193,
            3808278-3808347,3808431-3808486,3808578-3808649,
            3808678-3808811,3808967-3809030,3809111-3809240,
            3809326-3809541,3809629-3809750,3810527-3810701,
            3810788-3810878,3811040-3811197,3811330-3811518,
            3813257-3813340,3813362-3813536,3815300-3815955,
            3816226-3816648,3816752-3816790
          Length = 1151

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +3

Query: 486  ILRTGLVHAQDNSWAKQDCTQLKRIFAFQRGLFTVYRSHEVIRRRKSPLY 635
            +L T L  A+D+ W +++   ++R+   Q+ L  +  S  V RR +S L+
Sbjct: 893  VLWTNLEKAEDDLWLREEQLSIERLILCQKAL-EMEESERVHRRIQSCLF 941


>04_04_0444 + 25270620-25273001
          Length = 793

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 478 WHKFYELDWFTHKITPG-QNKIVRNSNEFSLFKEDSLPFTDLMK 606
           W    E DW T    PG Q  +      F+L +ED LPF + M+
Sbjct: 283 WSSVSE-DWVTFYAKPGAQCDVYAVCGAFALCREDMLPFCNCME 325


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 496 LDWFTHKITPGQNKIVRNSNEFSLFKEDSLPFTDLMKL 609
           +D F   +T    KI RNS +FS    DS+P + L +L
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


>01_05_0548 +
           23149271-23149568,23149766-23149845,23150137-23150223,
           23150421-23150729,23150774-23150899,23151977-23152360,
           23152603-23152608
          Length = 429

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +1

Query: 241 LVTFFDYSQFDATNSVFLTK-----KEIKTSYPHNFKVRQPRLNHKPFSVTIDVXSDIAT 405
           L   F +S F ++++  + +      ++KT    ++ ++ PRL +   S+  DV + +  
Sbjct: 64  LAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGE 123

Query: 406 DAVIKIFLGPKYNDXGFP 459
           D  +K +    Y   G P
Sbjct: 124 DIKVKPWAHTVYGKNGIP 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,404,260
Number of Sequences: 37544
Number of extensions: 342229
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)