Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K04
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 31 1.0
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 31 1.0
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 31 1.0
AL117204-16|CAB55130.1| 389|Caenorhabditis elegans Hypothetical... 30 1.3
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 3.1
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 5.4
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 5.4
AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical... 28 7.1
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +1
Query: 142 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 309
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 310 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVIKIFLGPKYNDXGF 456
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +1
Query: 142 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 309
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 310 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVIKIFLGPKYNDXGF 456
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 30.7 bits (66), Expect = 1.0
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Frame = +1
Query: 361 KPFSVTIDVXSDIATDAVIKIFLGPKYNDXGF---PITLEENWHKFYELDWFTHKITPGQ 531
K F V I S+I + ++++F P ++ G PI + H FY L++F K+T
Sbjct: 143 KTFGVKI-ASSEIQSSHLLELF--PSLSNLGVYNVPINTQILTHNFYWLEFFKTKVTL-D 198
Query: 532 NKIVRNSNEFSLFKEDSLPFTDL 600
+ +V N ++FS+ + ++LP +L
Sbjct: 199 DILVSNCSKFSI-EYNNLPDKEL 220
>AL117204-16|CAB55130.1| 389|Caenorhabditis elegans Hypothetical
protein Y116A8C.25 protein.
Length = 389
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 469 EENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKEDSLPFTDLMKLL 612
E +W + +E + H++ P ++++ N+ LF+ + +T KLL
Sbjct: 150 ENDWTETWEEFFIRHRLKPQIDRLIETHNDRQLFELSEILYTKTAKLL 197
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 348 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 199
W+TNL + NL+F +Y + G L ++ + + +++ F EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 47 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 172
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 47 NHSTSTPSCPVRLTFTKPHFETLHSISYIT--GLWVTLTHSSIT 172
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical
protein Y82E9BL.1 protein.
Length = 124
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 528 PRSYLVREPIQFVEFMPVFFQCDGESXIVV 439
P+S L+R+PIQ V+ V CDGE+ + +
Sbjct: 93 PQS-LLRKPIQIVDDCSVKMYCDGEAKLFI 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,322,012
Number of Sequences: 27780
Number of extensions: 318326
Number of successful extensions: 894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -