Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K04
         (680 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17480.1 68416.m02233 F-box family protein contains F-box dom...    32   0.31 
At3g17490.1 68416.m02234 F-box family protein similar to F-box p...    31   0.93 
At2g23200.1 68415.m02771 protein kinase family protein contains ...    29   2.8  
At5g67170.2 68418.m08468 SEC-C motif-containing protein / OTU-li...    29   3.8  
At5g67170.1 68418.m08467 SEC-C motif-containing protein / OTU-li...    29   3.8  
At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS...    28   5.0  
At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS...    28   5.0  
At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic...    28   6.6  
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ...    27   8.7  

>At3g17480.1 68416.m02233 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 373

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 463 TLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKED 579
           T+  +W KF  +D +TH+   G    +   N+ ++F ED
Sbjct: 291 TIVTSWSKFLRVDLYTHRFYNGVTFFIDEENKAAVFSED 329


>At3g17490.1 68416.m02234 F-box family protein similar to F-box
           protein family, AtFBX9 (GI:20197985) [Arabidopsis
           thaliana]; contains Pfam PF00646: F-box domain and
           TIGRFAM TIGR01640: F-box protein interaction domain
          Length = 388

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 608 NFMRSVNGKESSLKSENSFELRTILFCPGVILC 510
           + +    GK SSL   N FE+  I  C G+ILC
Sbjct: 81  DLLMEFKGKLSSLNDLNDFEISQIYPCDGLILC 113


>At2g23200.1 68415.m02771 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 834

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +1

Query: 391 SDIATDAVIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKITPGQNKIVRN---SNEF 561
           S +A    I++F  P  +D   P   ++N H  Y L+    KITP  + + R     ++ 
Sbjct: 177 SSLALINAIEVFSAP--DDLEIPSASDKNLHTIYRLNVGGEKITPDNDTLGRTWLPDDDD 234

Query: 562 SLFKEDS 582
            L+++DS
Sbjct: 235 FLYRKDS 241


>At5g67170.2 68418.m08468 SEC-C motif-containing protein / OTU-like
           cysteine protease family protein contains Pfam profiles
           PF02338: OTU-like cysteine protease, PF02810: SEC-C
           motif
          Length = 374

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 538 IVRNSNEFSLFKEDSLPFTDLMKLLDE 618
           IV+N   F  F ED +PF D  K +D+
Sbjct: 74  IVKNREMFEPFIEDDVPFEDYCKTMDD 100


>At5g67170.1 68418.m08467 SEC-C motif-containing protein / OTU-like
           cysteine protease family protein contains Pfam profiles
           PF02338: OTU-like cysteine protease, PF02810: SEC-C
           motif
          Length = 375

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 538 IVRNSNEFSLFKEDSLPFTDLMKLLDE 618
           IV+N   F  F ED +PF D  K +D+
Sbjct: 75  IVKNREMFEPFIEDDVPFEDYCKTMDD 101


>At3g61160.2 68416.m06845 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 438

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 427 LGPKYNDXGFPITLEENWHKFY 492
           + P+YND  FP    + WHK +
Sbjct: 337 MNPRYNDFKFPQIKAQPWHKIF 358


>At3g61160.1 68416.m06844 shaggy-related protein kinase beta /
           ASK-beta (ASK2) identical to shaggy-related protein
           kinase beta SP:O23145 GI:2569931 from [Arabidopsis
           thaliana]
          Length = 431

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 427 LGPKYNDXGFPITLEENWHKFY 492
           + P+YND  FP    + WHK +
Sbjct: 330 MNPRYNDFKFPQIKAQPWHKIF 351


>At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical
           to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis
           thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana]
          Length = 344

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 21/75 (28%), Positives = 35/75 (46%)
 Frame = +1

Query: 76  SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFF 255
           SA   ++ A+      +L   ++   +A KH+  P P   +   GV +N   V   V  F
Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240

Query: 256 DYSQFDATNSVFLTK 300
            YS ++++ S  LTK
Sbjct: 241 RYSYWNSSQSYVLTK 255


>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
           TIGR01640 : F-box protein interaction domain;
          Length = 364

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -3

Query: 354 ESWLTNLEVVWVTSLNLFFGQEYTVSG--IKLAIVKECD*FLNDNI-IDF 214
           ESW  NL ++    ++ +F Q Y V G  ++ + V E     N+ + IDF
Sbjct: 39  ESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDF 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,423,637
Number of Sequences: 28952
Number of extensions: 292486
Number of successful extensions: 889
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)