BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_K04 (680 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g17480.1 68416.m02233 F-box family protein contains F-box dom... 32 0.31 At3g17490.1 68416.m02234 F-box family protein similar to F-box p... 31 0.93 At2g23200.1 68415.m02771 protein kinase family protein contains ... 29 2.8 At5g67170.2 68418.m08468 SEC-C motif-containing protein / OTU-li... 29 3.8 At5g67170.1 68418.m08467 SEC-C motif-containing protein / OTU-li... 29 3.8 At3g61160.2 68416.m06845 shaggy-related protein kinase beta / AS... 28 5.0 At3g61160.1 68416.m06844 shaggy-related protein kinase beta / AS... 28 5.0 At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identic... 28 6.6 At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ... 27 8.7 >At3g17480.1 68416.m02233 F-box family protein contains F-box domain Pfam:PF00646 Length = 373 Score = 32.3 bits (70), Expect = 0.31 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 463 TLEENWHKFYELDWFTHKITPGQNKIVRNSNEFSLFKED 579 T+ +W KF +D +TH+ G + N+ ++F ED Sbjct: 291 TIVTSWSKFLRVDLYTHRFYNGVTFFIDEENKAAVFSED 329 >At3g17490.1 68416.m02234 F-box family protein similar to F-box protein family, AtFBX9 (GI:20197985) [Arabidopsis thaliana]; contains Pfam PF00646: F-box domain and TIGRFAM TIGR01640: F-box protein interaction domain Length = 388 Score = 30.7 bits (66), Expect = 0.93 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -1 Query: 608 NFMRSVNGKESSLKSENSFELRTILFCPGVILC 510 + + GK SSL N FE+ I C G+ILC Sbjct: 81 DLLMEFKGKLSSLNDLNDFEISQIYPCDGLILC 113 >At2g23200.1 68415.m02771 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 834 Score = 29.1 bits (62), Expect = 2.8 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%) Frame = +1 Query: 391 SDIATDAVIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKITPGQNKIVRN---SNEF 561 S +A I++F P +D P ++N H Y L+ KITP + + R ++ Sbjct: 177 SSLALINAIEVFSAP--DDLEIPSASDKNLHTIYRLNVGGEKITPDNDTLGRTWLPDDDD 234 Query: 562 SLFKEDS 582 L+++DS Sbjct: 235 FLYRKDS 241 >At5g67170.2 68418.m08468 SEC-C motif-containing protein / OTU-like cysteine protease family protein contains Pfam profiles PF02338: OTU-like cysteine protease, PF02810: SEC-C motif Length = 374 Score = 28.7 bits (61), Expect = 3.8 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 538 IVRNSNEFSLFKEDSLPFTDLMKLLDE 618 IV+N F F ED +PF D K +D+ Sbjct: 74 IVKNREMFEPFIEDDVPFEDYCKTMDD 100 >At5g67170.1 68418.m08467 SEC-C motif-containing protein / OTU-like cysteine protease family protein contains Pfam profiles PF02338: OTU-like cysteine protease, PF02810: SEC-C motif Length = 375 Score = 28.7 bits (61), Expect = 3.8 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 538 IVRNSNEFSLFKEDSLPFTDLMKLLDE 618 IV+N F F ED +PF D K +D+ Sbjct: 75 IVKNREMFEPFIEDDVPFEDYCKTMDD 101 >At3g61160.2 68416.m06845 shaggy-related protein kinase beta / ASK-beta (ASK2) identical to shaggy-related protein kinase beta SP:O23145 GI:2569931 from [Arabidopsis thaliana] Length = 438 Score = 28.3 bits (60), Expect = 5.0 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +1 Query: 427 LGPKYNDXGFPITLEENWHKFY 492 + P+YND FP + WHK + Sbjct: 337 MNPRYNDFKFPQIKAQPWHKIF 358 >At3g61160.1 68416.m06844 shaggy-related protein kinase beta / ASK-beta (ASK2) identical to shaggy-related protein kinase beta SP:O23145 GI:2569931 from [Arabidopsis thaliana] Length = 431 Score = 28.3 bits (60), Expect = 5.0 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = +1 Query: 427 LGPKYNDXGFPITLEENWHKFY 492 + P+YND FP + WHK + Sbjct: 330 MNPRYNDFKFPQIKAQPWHKIF 351 >At1g13260.1 68414.m01539 DNA-binding protein RAV1 (RAV1) identical to SP|Q9ZWM9 DNA-binding protein RAV1 {Arabidopsis thaliana}, RAV1 GI:3868857 from [Arabidopsis thaliana] Length = 344 Score = 27.9 bits (59), Expect = 6.6 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = +1 Query: 76 SALDFYQTALRDPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFF 255 SA ++ A+ +L ++ +A KH+ P P + GV +N V V F Sbjct: 183 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHF--PLPSSNVSVKGVLLNFEDVNGKVWRF 240 Query: 256 DYSQFDATNSVFLTK 300 YS ++++ S LTK Sbjct: 241 RYSYWNSSQSYVLTK 255 >At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM TIGR01640 : F-box protein interaction domain; Length = 364 Score = 27.5 bits (58), Expect = 8.7 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -3 Query: 354 ESWLTNLEVVWVTSLNLFFGQEYTVSG--IKLAIVKECD*FLNDNI-IDF 214 ESW NL ++ ++ +F Q Y V G ++ + V E N+ + IDF Sbjct: 39 ESWFVNLNLLRTNRISGYFIQHYIVKGHELRTSFVHERSDLQNNGVSIDF 88 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,423,637 Number of Sequences: 28952 Number of extensions: 292486 Number of successful extensions: 889 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 889 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1438152744 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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