Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K03
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    34   0.017
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    30   0.21 
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    28   0.83 
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   4.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   4.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   5.9  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   5.9  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   7.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.7  

>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
 Frame = +1

Query: 97   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1655

Query: 277  NPGQVHVVDNSGVPS-DGNSDHVVIANPDPFFSQPSNGP-SGNYEPISTGPAFVDFNHPN 450
            +P        S  PS    S      +P    + PS  P S +Y P  T P++     P+
Sbjct: 1656 SPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSP-TSPS 1710

Query: 451  YPP 459
            Y P
Sbjct: 1711 YSP 1713



 Score = 33.5 bits (73), Expect = 0.022
 Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
 Frame = +1

Query: 97   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1641

Query: 277  NPGQVHVVDNSGVPS-DGNSDHVVIANPDPFFSQPSNGP-SGNYEPISTGPAFVDFNHPN 450
            +P        S  PS    S      +P    + PS  P S +Y P  T P++     P+
Sbjct: 1642 SPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSP-TSPS 1696

Query: 451  YPP 459
            Y P
Sbjct: 1697 YSP 1699



 Score = 32.3 bits (70), Expect = 0.051
 Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 2/123 (1%)
 Frame = +1

Query: 97   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
            +P Y P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1568 SPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSY 1627

Query: 277  NPGQVHVVDNSGVPS-DGNSDHVVIANPDPFFSQPSNGP-SGNYEPISTGPAFVDFNHPN 450
            +P        S  PS    S      +P    + PS  P S +Y P  T P++     P+
Sbjct: 1628 SPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSP-TSPS 1682

Query: 451  YPP 459
            Y P
Sbjct: 1683 YSP 1685



 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +1

Query: 97   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1659 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1718

Query: 277  NP 282
            +P
Sbjct: 1719 SP 1720



 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +1

Query: 97   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1725

Query: 277  NP 282
            +P
Sbjct: 1726 SP 1727



 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +1

Query: 97   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732

Query: 277  NP 282
            +P
Sbjct: 1733 SP 1734



 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +1

Query: 97   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1680 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1739

Query: 277  NP 282
            +P
Sbjct: 1740 SP 1741



 Score = 31.1 bits (67), Expect = 0.12
 Identities = 15/62 (24%), Positives = 24/62 (38%)
 Frame = +1

Query: 97   NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
            +P Y+P        +P Y+P        +P Y+P        +P Y P        +P Y
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746

Query: 277  NP 282
            +P
Sbjct: 1747 SP 1748


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 304 NSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 411
           N  V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 402 NHSVTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 163 VHVVD-HNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDYNPGQVHVV 300
           ++ +D HN + N   V V+  N  ++    +V+  NPD+ P  + VV
Sbjct: 537 INAIDVHNSEQNLLAVFVIFRNLSHFEANQNVLVQNPDFFPLLIRVV 583



 Score = 25.8 bits (54), Expect = 4.4
 Identities = 31/134 (23%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
 Frame = +1

Query: 79  VHVVD-HNPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVD----HNPDYYPG 243
           ++ +D HN + N   V V+  N  +     +V+  NPD+ P  + VV     H       
Sbjct: 537 INAIDVHNSEQNLLAVFVIFRNLSHFEANQNVLVQNPDFFPLLIRVVKSLNFHATSLLRS 596

Query: 244 QVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVV--IANPDPFFSQPSNGPSGNYEPIST 417
             + +D + D       +  N  +P+   + HV+  I +  PF  + S     +  P S 
Sbjct: 597 SRNTLDLHKDVLIVLCQLSQNFILPNVDVARHVLLFILSFSPFNRKKSKTILNDTLPTSI 656

Query: 418 GPAFVDFNHPNYPP 459
            P++    HP   P
Sbjct: 657 -PSYTPATHPYAGP 669


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +1

Query: 364  FFSQPSNGP----SGNYEPISTGPAFVDF 438
            F + P+N P    SG+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 337 HVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPPKRYDXP 477
           HV ++NPD     P +  S NY  P+    A   +F+ P +   +Y  P
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSP 526


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 370 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 459
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +1

Query: 394 GNYEPI--STGPAFVDFNHPNYPPKRYDXPLAR 486
           G+Y P   ST P    + +P+YPP  Y    AR
Sbjct: 117 GSYPPTQPSTQPLPQSYGYPSYPPAGYRGGSAR 149


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +1

Query: 166 HVVDHNPDYNPGQVHVVD---HNPDYYPGQVH-VVDHNPDYNPGQVHVVDNSGVPSDGNS 333
           H  + N D     +H +D   +  + +P Q++  + HN DY       V   G+P  G  
Sbjct: 419 HNSNENGDLITNSLHGLDFLENANESFPEQMYPFIKHNKDYISNHPDEVPPDGLPQKGKH 478

Query: 334 D 336
           D
Sbjct: 479 D 479


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 562 ENIIRLIIISPSFKIAYLYETFTSHHGREGXRIAW 458
           +N   +I +  SF   Y  +  TS HG+   R AW
Sbjct: 770 KNTTAVIDVDSSFCRNYSEDASTSLHGQTAGRFAW 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,919
Number of Sequences: 5004
Number of extensions: 55315
Number of successful extensions: 165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)