Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K03
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen pro... 40 0.001
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 33 0.14
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 33 0.14
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical pr... 31 0.58
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 31 0.58
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 31 0.58
AL117207-22|CAO82073.1| 505|Caenorhabditis elegans Hypothetical... 29 1.8
Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z70307-11|CAA94337.1| 488|Caenorhabditis elegans Hypothetical p... 29 3.1
Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 4.1
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 4.1
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 4.1
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 4.1
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 4.1
AF039046-10|AAB94220.2| 233|Caenorhabditis elegans Serpentine r... 28 4.1
AF039046-9|AAX22285.1| 341|Caenorhabditis elegans Serpentine re... 28 4.1
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 4.1
Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical pr... 27 7.1
U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical p... 27 7.1
AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical ... 27 7.1
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical pr... 27 9.4
X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll... 27 9.4
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 27 9.4
AL117195-29|CAB55017.2| 204|Caenorhabditis elegans Hypothetical... 27 9.4
AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical ... 27 9.4
AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical ... 27 9.4
AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short i... 27 9.4
AF003142-1|AAB54189.2| 389|Caenorhabditis elegans Hypothetical ... 27 9.4
AB011382-1|BAA24982.1| 357|Caenorhabditis elegans RecA/Rad51/Dm... 27 9.4
>AF047656-13|AAC05105.1| 313|Caenorhabditis elegans Collagen
protein 116 protein.
Length = 313
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -1
Query: 328 CRPMEHHYCPPREPGLDYSQGCD-QPRAPGLDNSQGYDRLRAPGLDYSQGCDRLRAP 161
C P H CPP PG+ G D P PGLD G R +DY+ G + ++ P
Sbjct: 100 CAPATSH-CPPGPPGIFGPPGEDGTPGEPGLDGDPGTTATRQMAMDYTGGSECVKCP 155
Score = 27.1 bits (57), Expect = 9.4
Identities = 23/64 (35%), Positives = 26/64 (40%)
Frame = -1
Query: 301 PPREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRLRAPGLDYSQGCN*LRA 122
PP PG QGC P D G ++ PG + G PG S G N A
Sbjct: 194 PPGPPGYPGRQGCQGKDGPSGD--PGLRFIKTPGPVGAAGPP--GPPGPPGSPGENTEGA 249
Query: 121 PGLD 110
PGLD
Sbjct: 250 PGLD 253
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 6/127 (4%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1609 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSY 1668
Query: 277 NPGQVHVVDNSGVPSDGNSDH----VVIANPDPFFS--QPSNGPSGNYEPISTGPAFVDF 438
+P S S + + + P +S PS G Y P S P +
Sbjct: 1669 SPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSS--PKYSP- 1725
Query: 439 NHPNYPP 459
+ P Y P
Sbjct: 1726 SSPTYSP 1732
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y G + + +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1707 SPSYESGGGYSPS-SPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTY 1765
Query: 277 NP 282
NP
Sbjct: 1766 NP 1767
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/62 (22%), Positives = 21/62 (33%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y P +P Y P + Y+P +P Y P +P Y
Sbjct: 1789 SPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPSSPTY 1848
Query: 277 NP 282
+P
Sbjct: 1849 DP 1850
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/62 (22%), Positives = 21/62 (33%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y+P +P Y P +P Y P + Y P +P Y
Sbjct: 1775 SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTY 1834
Query: 277 NP 282
+P
Sbjct: 1835 SP 1836
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 6/127 (4%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1616 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSY 1675
Query: 277 NPGQVHVVDNSGVPSDGNSDH----VVIANPDPFFS--QPSNGPSGNYEPISTGPAFVDF 438
+P S S + + + P +S PS G Y P S P +
Sbjct: 1676 SPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSS--PKYSP- 1732
Query: 439 NHPNYPP 459
+ P Y P
Sbjct: 1733 SSPTYSP 1739
Score = 31.5 bits (68), Expect = 0.44
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y G + + +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1714 SPSYESGGGYSPS-SPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTY 1772
Query: 277 NP 282
NP
Sbjct: 1773 NP 1774
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/62 (22%), Positives = 21/62 (33%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y P +P Y P + Y+P +P Y P +P Y
Sbjct: 1796 SPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTYSPASPSYSPSSPTY 1855
Query: 277 NP 282
+P
Sbjct: 1856 DP 1857
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/62 (22%), Positives = 21/62 (33%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y+P +P Y P +P Y P + Y P +P Y
Sbjct: 1782 SPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSPTYSPSSPTY 1841
Query: 277 NP 282
+P
Sbjct: 1842 SP 1843
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +1
Query: 244 QVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPF-FSQPSNGPSGN--YEPIS 414
+V +D+ P VH + + GNS + +P+P +P++ P+ + P
Sbjct: 451 EVRELDYRPYEKENGVHTPNAETNSTQGNSSPISTISPEPVTIVKPASTPATDSVSTPSV 510
Query: 415 TGPAFVDFNHPNYPPKRYDXPLARGGK 495
GPAF P PP + P+ +
Sbjct: 511 VGPAF-GKKVPEQPPVNFRKPIGASNR 536
>Z70208-1|CAA94141.1| 339|Caenorhabditis elegans Hypothetical
protein F54B11.1 protein.
Length = 339
Score = 31.1 bits (67), Expect = 0.58
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = -1
Query: 301 PPREPGLDYSQG-CDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRLRAPGLDYSQGCN*LR 125
PP PG + G QP +PG G APG G + PGLD G N
Sbjct: 225 PPGPPGQPGNHGLAGQPGSPGQSVLGGIVGFAAPGPMGPPGL--MGPPGLDAQNGANGFG 282
Query: 124 APGL 113
PGL
Sbjct: 283 PPGL 286
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +1
Query: 244 QVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPF-FSQPSNGPSGN--YEPIS 414
+V +D+ P VH + + GNS + +P+P +P++ P+ + P
Sbjct: 451 EVRELDYRPYEKENGVHTPNAETNSTQGNSSPISTISPEPVTIVKPASTPATDSVSTPSV 510
Query: 415 TGPAFVDFNHPNYPPKRYDXPLARGGK 495
GPAF P PP + P+ +
Sbjct: 511 VGPAF-GKKVPEQPPVNFRKPIGASNR 536
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 31.1 bits (67), Expect = 0.58
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Frame = +1
Query: 244 QVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPF-FSQPSNGPSGN--YEPIS 414
+V +D+ P VH + + GNS + +P+P +P++ P+ + P
Sbjct: 451 EVRELDYRPYEKENGVHTPNAETNSTQGNSSPISTISPEPVTIVKPASTPATDSVSTPSV 510
Query: 415 TGPAFVDFNHPNYPPKRYDXPLARGGK 495
GPAF P PP + P+ +
Sbjct: 511 VGPAF-GKKVPEQPPVNFRKPIGASNR 536
>AL117207-22|CAO82073.1| 505|Caenorhabditis elegans Hypothetical
protein Y60A3A.27 protein.
Length = 505
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/67 (22%), Positives = 23/67 (34%)
Frame = +1
Query: 136 YNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDYNPGQVHVVDNSGV 315
+NP N + NP ++ G NP + G NP +N G +
Sbjct: 252 WNPQRNQWNPQLNHGNPQFSYGNAQFNQGNPQFNQGNSQFNQWNPQFNQGNSQFNQWNSN 311
Query: 316 PSDGNSD 336
P G +
Sbjct: 312 PQSGRGN 318
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPG--QVHVVDHNP 270
NP N + + NP ++ G NP +N G NP + G Q + + NP
Sbjct: 253 NPQRNQWNPQLNHGNPQFSYGNAQFNQGNPQFNQGNSQFNQWNPQFNQGNSQFNQWNSNP 312
Query: 271 DYNPG 285
G
Sbjct: 313 QSGRG 317
>Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical
protein T06E4.8 protein.
Length = 199
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 343 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 459
V A P P F+ P+ P PI GPAF P P
Sbjct: 110 VFAAPRPVFASPALAPVAPMAPILRGPAFAYAPSPVLAP 148
>Z68113-3|CAA92150.1| 333|Caenorhabditis elegans Hypothetical
protein E03G2.4 protein.
Length = 333
Score = 29.1 bits (62), Expect = 2.3
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Frame = -1
Query: 355 GSQ*QRGHYCRPMEHHYCPPREPGLDYSQGCD-QPRAPGLDNSQGYDRLRAPGLDYSQGC 179
GSQ G C + PP PG D S G D + PG D AP D+ C
Sbjct: 130 GSQGGGGGCCGCGQSPPGPPGRPGSDGSPGSDGEAGIPGRDGPDAPRATPAPNFDWCFDC 189
Query: 178 DRLRAPGLDYSQG 140
PG QG
Sbjct: 190 PP-GEPGRQGKQG 201
>Z73969-6|CAA98236.1| 295|Caenorhabditis elegans Hypothetical
protein C12D8.8 protein.
Length = 295
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Frame = -1
Query: 301 PPREPGLDYSQGCD-QPRAPGLDNSQGYDRLRAPGLDYSQGCDRLRAPGLDYSQGCN 134
PP E G G D QP G D +GY APG G PG+D G N
Sbjct: 189 PPGENGQPGQSGKDGQPGRNGADGKRGYGAPGAPGAQGKPGPS--GPPGIDGYPGQN 243
>Z70307-11|CAA94337.1| 488|Caenorhabditis elegans Hypothetical
protein C39E9.10 protein.
Length = 488
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +2
Query: 218 IITLTIIQARCTWLITTLTIIQARFTWW-TIVVFHRTA 328
I+ T CTW T L + +WW V+ H TA
Sbjct: 219 ILLKTPTLVACTWGYTALVFVSGTLSWWEPTVIQHLTA 256
>Z71178-1|CAA94874.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.1 protein.
Length = 297
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Frame = -1
Query: 301 PPREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGL-DYSQGCDRLRAPGLDYSQGCN*LR 125
PP PG +G P PG + Y+ +RAP +Q C + A S C +
Sbjct: 108 PPGPPGHPGQRGI--PGIPGRNGQDNYNTIRAPACPPRNQDCIKCPAGPPGPSGTCGQVG 165
Query: 124 APGLDYNQG 98
PG D G
Sbjct: 166 RPGPDGRPG 174
>Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical
protein T06E4.9 protein.
Length = 212
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 343 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 459
V A P P F+ P+ P P+ GPAF P P
Sbjct: 123 VFAAPRPVFAAPALAPVAPMAPVLRGPAFAYAPSPVLAP 161
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = -1
Query: 301 PPREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRLRAPGLDYSQG 140
P EPG + G P PG D G D APG G +R P D G
Sbjct: 445 PKGEPGYRGTPGQSIPGLPGKDGKPGLD--GAPGRKGENGLPGVRGPPGDSLNG 496
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 298 PREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRL-RAPGLDYSQG 140
P +PG + P APGL G+ L PG G L APGL G
Sbjct: 1263 PGQPGQSIAGPVGPPGAPGLQGKDGFPGL--PGQKGESGLSGLPGAPGLKGESG 1314
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = -1
Query: 301 PPREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRLRAPGLDYSQG 140
P EPG + G P PG D G D APG G +R P D G
Sbjct: 444 PKGEPGYRGTPGQSIPGLPGKDGKPGLD--GAPGRKGENGLPGVRGPPGDSLNG 495
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 298 PREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRL-RAPGLDYSQG 140
P +PG + P APGL G+ L PG G L APGL G
Sbjct: 1262 PGQPGQSIAGPVGPPGAPGLQGKDGFPGL--PGQKGESGLSGLPGAPGLKGESG 1313
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = -1
Query: 301 PPREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRLRAPGLDYSQG 140
P EPG + G P PG D G D APG G +R P D G
Sbjct: 444 PKGEPGYRGTPGQSIPGLPGKDGKPGLD--GAPGRKGENGLPGVRGPPGDSLNG 495
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 298 PREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRL-RAPGLDYSQG 140
P +PG + P APGL G+ L PG G L APGL G
Sbjct: 1262 PGQPGQSIAGPVGPPGAPGLQGKDGFPGL--PGQKGESGLSGLPGAPGLKGESG 1313
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = -1
Query: 301 PPREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRLRAPGLDYSQG 140
P EPG + G P PG D G D APG G +R P D G
Sbjct: 445 PKGEPGYRGTPGQSIPGLPGKDGKPGLD--GAPGRKGENGLPGVRGPPGDSLNG 496
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 298 PREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRL-RAPGLDYSQG 140
P +PG + P APGL G+ L PG G L APGL G
Sbjct: 1263 PGQPGQSIAGPVGPPGAPGLQGKDGFPGL--PGQKGESGLSGLPGAPGLKGESG 1314
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = -1
Query: 301 PPREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRLRAPGLDYSQG 140
P EPG + G P PG D G D APG G +R P D G
Sbjct: 481 PKGEPGYRGTPGQSIPGLPGKDGKPGLD--GAPGRKGENGLPGVRGPPGDSLNG 532
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -1
Query: 298 PREPGLDYSQGCDQPRAPGLDNSQGYDRLRAPGLDYSQGCDRL-RAPGLDYSQG 140
P +PG + P APGL G+ L PG G L APGL G
Sbjct: 1299 PGQPGQSIAGPVGPPGAPGLQGKDGFPGL--PGQKGESGLSGLPGAPGLKGESG 1350
>AF039046-10|AAB94220.2| 233|Caenorhabditis elegans Serpentine
receptor, class j protein23, isoform a protein.
Length = 233
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 233 IIQARCTWLITTLTIIQARFTWWTIVVFHRTAI 331
II RC+++ T I+ A FT+ +V+F A+
Sbjct: 91 IIAFRCSFIAATYAILHAHFTYRFMVLFKNKAL 123
>AF039046-9|AAX22285.1| 341|Caenorhabditis elegans Serpentine
receptor, class j protein23, isoform b protein.
Length = 341
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 233 IIQARCTWLITTLTIIQARFTWWTIVVFHRTAI 331
II RC+++ T I+ A FT+ +V+F A+
Sbjct: 91 IIAFRCSFIAATYAILHAHFTYRFMVLFKNKAL 123
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = -1
Query: 301 PPREPGLDYSQGCDQPRAPGLDNSQGYD-RLRAPGLDYSQGCDRLRAPGLD 152
PP PG D S G QP PG G D + PG G D PG D
Sbjct: 259 PPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQD--GGPGTD 307
>Z71262-8|CAA95812.1| 302|Caenorhabditis elegans Hypothetical
protein F22D6.10 protein.
Length = 302
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 298 PREPGLDYSQGCDQPRAPGLDNSQGYDRLRA-PG 200
P PG D ++G QP +PG S+G + R PG
Sbjct: 196 PGRPGRDGTRGVGQPGSPGQPGSRGPEGPRGQPG 229
>U42841-13|AAC48170.1| 682|Caenorhabditis elegans Hypothetical
protein T17H7.1 protein.
Length = 682
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/61 (27%), Positives = 22/61 (36%)
Frame = +1
Query: 100 PDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDYN 279
PD+ PG+ PD+ P Q PG PD+ PG PD+
Sbjct: 408 PDFGPGRQGGRGQGPDFGP-QDDFSGRRGSGGPGGRGGRGQEPDFGPGGQGGRGQGPDFG 466
Query: 280 P 282
P
Sbjct: 467 P 467
>AF038605-2|AAB92020.1| 698|Caenorhabditis elegans Hypothetical
protein C02B10.5 protein.
Length = 698
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/78 (28%), Positives = 30/78 (38%)
Frame = +1
Query: 223 NPDYYPGQVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNY 402
+P YPG +H P PG S P G P+P+ P P G
Sbjct: 398 SPGQYPGPMHYPGMPPMMPPGAPFSAGASYPPMGGPFP------PNPYGMHPGMTPGG-- 449
Query: 403 EPISTGPAFVDFNHPNYP 456
P+S P + F P++P
Sbjct: 450 YPMS-APGKMPFGSPSFP 466
>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
protein K04H4.1b protein.
Length = 1502
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 292 EPGLDYSQG-CDQPRAPGLDNSQGYDRLRAPGLDYSQGCD 176
EPGL G C P G D GYD PGLD G D
Sbjct: 436 EPGLPGEPGDCGYP---GEDGLPGYDIQGPPGLDGQSGRD 472
>Z27078-6|CAA81584.4| 1759|Caenorhabditis elegans Hypothetical
protein K04H4.1a protein.
Length = 1759
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 292 EPGLDYSQG-CDQPRAPGLDNSQGYDRLRAPGLDYSQGCD 176
EPGL G C P G D GYD PGLD G D
Sbjct: 436 EPGLPGEPGDCGYP---GEDGLPGYDIQGPPGLDGQSGRD 472
>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV)
collagen protein.
Length = 1758
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -1
Query: 292 EPGLDYSQG-CDQPRAPGLDNSQGYDRLRAPGLDYSQGCD 176
EPGL G C P G D GYD PGLD G D
Sbjct: 435 EPGLPGEPGDCGYP---GEDGLPGYDIQGPPGLDGQSGRD 471
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +1
Query: 301 DNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 426
D SG P G DP +QPS GP G + P P+
Sbjct: 291 DPSGAPPSGGPPGPF----DPSGAQPSGGPPGPFNPSGAPPS 328
>AL117195-29|CAB55017.2| 204|Caenorhabditis elegans Hypothetical
protein Y57A10A.14 protein.
Length = 204
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 223 NPDYYPGQVHVVDHNPDYNPGQVHVVDNSGVPSDGNSD 336
N YY + V Y P V + DNS +P N +
Sbjct: 60 NTSYYGSIIRKVSAQVPYQPDYVRIEDNSTIPIFDNEE 97
>AL023838-7|CAE47473.1| 357|Caenorhabditis elegans Hypothetical
protein Y43C5A.6b protein.
Length = 357
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 199 GQVHVVDHNPDYYPGQVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVV 345
G+ +D N + P ++ + YN HV++N V NS+H++
Sbjct: 171 GKCMYIDTNATFRPERIIAIAQR--YNMDSAHVLENIAVARAYNSEHLM 217
>AL023838-6|CAB61038.2| 395|Caenorhabditis elegans Hypothetical
protein Y43C5A.6a protein.
Length = 395
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 199 GQVHVVDHNPDYYPGQVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVV 345
G+ +D N + P ++ + YN HV++N V NS+H++
Sbjct: 209 GKCMYIDTNATFRPERIIAIAQR--YNMDSAHVLENIAVARAYNSEHLM 255
>AF061201-1|AAD10194.1| 357|Caenorhabditis elegans RAD51 short
isoform protein.
Length = 357
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 199 GQVHVVDHNPDYYPGQVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVV 345
G+ +D N + P ++ + YN HV++N V NS+H++
Sbjct: 171 GKCMYIDTNATFRPERIIAIAQR--YNMDSAHVLENIAVARAYNSEHLM 217
>AF003142-1|AAB54189.2| 389|Caenorhabditis elegans Hypothetical
protein F57C9.6 protein.
Length = 389
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -2
Query: 246 LAWIIVRVMIDYVHLAWIIVRVVIDYVHLAWIIVRVVIDYVHLAWIIIR--VMIDHVHSV 73
+ W V ++A+ I+ ++++ V A II+R H+ +III +ID + +
Sbjct: 37 MEWSTVGGRFGMAYIAFGILAILVNIVIFACIIIRRRTTSSHVFYIIILNFTIIDTIKGI 96
Query: 72 C 70
C
Sbjct: 97 C 97
>AB011382-1|BAA24982.1| 357|Caenorhabditis elegans
RecA/Rad51/Dmc1-like protein protein.
Length = 357
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 199 GQVHVVDHNPDYYPGQVHVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVV 345
G+ +D N + P ++ + YN HV++N V NS+H++
Sbjct: 171 GKCMYIDTNATFRPERIIAIAQR--YNMDSAHVLENIAVARAYNSEHLM 217
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,244
Number of Sequences: 27780
Number of extensions: 340101
Number of successful extensions: 1048
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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