Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K03
(568 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 33 0.10
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 30 0.94
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 30 0.94
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.2
At4g28690.1 68417.m04099 expressed protein 29 1.6
At3g49050.1 68416.m05358 lipase class 3 family protein / calmodu... 29 1.6
At5g18560.1 68418.m02194 AP2 domain-containing transcription fac... 29 2.2
At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal ... 29 2.9
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 28 5.0
At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family... 28 5.0
At1g09280.2 68414.m01038 expressed protein contains Pfam profile... 28 5.0
At1g09280.1 68414.m01037 expressed protein contains Pfam profile... 28 5.0
At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family... 27 6.6
At4g11510.1 68417.m01849 expressed protein ; expression support... 27 6.6
At5g59460.1 68418.m07452 scarecrow-like transcription factor 11 ... 27 8.7
At1g15940.1 68414.m01913 expressed protein similar To androgen-i... 27 8.7
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 33.5 bits (73), Expect = 0.10
Identities = 29/121 (23%), Positives = 43/121 (35%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1661 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSY 1720
Query: 277 NPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYP 456
P S S + A P + P + S NY P T P++ P+Y
Sbjct: 1721 GPTSPSYNPQSAKYSPSIAYSPSNARLSP--ASPYSPTSPNYSP--TSPSYSP-TSPSYS 1775
Query: 457 P 459
P
Sbjct: 1776 P 1776
Score = 33.1 bits (72), Expect = 0.13
Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 1/122 (0%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1577 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1636
Query: 277 NPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGP-SGNYEPISTGPAFVDFNHPNY 453
+P S S S +P + PS P S +Y P T P++ P+Y
Sbjct: 1637 SPTSPAYSPTSPAYSP-TSPAYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSP-TSPSY 1692
Query: 454 PP 459
P
Sbjct: 1693 SP 1694
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 106 YNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDYNP 282
Y+P + +P Y+P + +P Y+P +P Y P + +PDY+P
Sbjct: 1740 YSPSNARLSPASP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSP 1797
Score = 30.7 bits (66), Expect = 0.71
Identities = 32/123 (26%), Positives = 44/123 (35%), Gaps = 2/123 (1%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1542 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1601
Query: 277 NPGQVHVVDNSGVPS-DGNSDHVVIANPDPFFSQPSNGP-SGNYEPISTGPAFVDFNHPN 450
+P S PS S +P + PS P S Y P T PA+ P
Sbjct: 1602 SPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP--TSPAYSP-TSPA 1656
Query: 451 YPP 459
Y P
Sbjct: 1657 YSP 1659
Score = 30.7 bits (66), Expect = 0.71
Identities = 31/127 (24%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1647 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1706
Query: 277 NPGQVHVVDNS---GVPSDGNSDHVVIANPDPFFSQPSN---GPSGNYEPISTGPAFVDF 438
+P S G S + +P +S PSN P+ Y P T P +
Sbjct: 1707 SPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYS-PSNARLSPASPYSP--TSPNYSP- 1762
Query: 439 NHPNYPP 459
P+Y P
Sbjct: 1763 TSPSYSP 1769
Score = 29.9 bits (64), Expect = 1.2
Identities = 30/123 (24%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1622
Query: 277 NPGQVHVVDNSGVPS-DGNSDHVVIANPDPFFSQPSNGP-SGNYEPISTGPAFVDFNHPN 450
+P S PS S +P + P+ P S +Y P T P++ P+
Sbjct: 1623 SPTSPSYSPTS--PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP--TSPSYSP-TSPS 1677
Query: 451 YPP 459
Y P
Sbjct: 1678 YSP 1680
Score = 29.9 bits (64), Expect = 1.2
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 2/106 (1%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPD--YNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNP 270
+P YNP Y+P Y+P + +P Y+P + +P Y P +P
Sbjct: 1724 SPSYNPQSA---KYSPSIAYSPSNARLSPASP-YSPTSPNYSPTSPSYSPT-------SP 1772
Query: 271 DYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEP 408
Y+P +S S + D+ A P S +G Y P
Sbjct: 1773 SYSPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGYSPSSTGQYTP 1818
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/62 (24%), Positives = 24/62 (38%)
Frame = +1
Query: 97 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 276
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1640 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1699
Query: 277 NP 282
+P
Sbjct: 1700 SP 1701
Score = 27.1 bits (57), Expect = 8.7
Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 2/120 (1%)
Frame = +1
Query: 106 YNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDYNPG 285
Y G + +P Y+P +P Y+P +P Y P +P Y+P
Sbjct: 1531 YVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1590
Query: 286 QVHVVDNSGVPS-DGNSDHVVIANPDPFFSQPSNGP-SGNYEPISTGPAFVDFNHPNYPP 459
S PS S +P + PS P S +Y P T P++ P Y P
Sbjct: 1591 SPAYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSP-TSPAYSP 1645
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 30.3 bits (65), Expect = 0.94
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 343 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRYDXPLARGG 492
++A P P+ P+ GP P+S+ PA N+P Y P GG
Sbjct: 245 MMAPPPPYGQPPNAGPFTGNSPLSSPPAHSIPPPTNFPGVPYGRPPMPGG 294
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 30.3 bits (65), Expect = 0.94
Identities = 23/86 (26%), Positives = 38/86 (44%)
Frame = +1
Query: 154 PGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDYNPGQVHVVDNSGVPSDGNS 333
P + +NP+Y G VH N Y V++ +P P H +N + + G+S
Sbjct: 879 PSRYPPASNNPNYTSGMVH---GNMQYQSQSVNMPQLSP--LPNMPH--NNYSMYTQGSS 931
Query: 334 DHVVIANPDPFFSQPSNGPSGNYEPI 411
+H V + ++ P+ NY PI
Sbjct: 932 NHPVSQPMVQQYQPEASMPNQNYGPI 957
>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 456
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 5 SDTIRQ*KLSCFSSSPYWPWLPQTECTWSIITLII-IQA 118
S I + + SC SSP+ PW+P + +I I+ IQA
Sbjct: 96 SKIIEEKRYSCIISSPFTPWVPAVAASHNISCAILWIQA 134
>At4g28690.1 68417.m04099 expressed protein
Length = 448
Score = 29.5 bits (63), Expect = 1.6
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = +1
Query: 226 PDYYPGQVHVVDHNPDYNPGQVHVVDN--SGVPSDGNSDHVVIANPDPFFSQPSNG---P 390
P + Q V NP P + + N SG + S VV +NP +PSNG P
Sbjct: 225 PGHRTEQSRTVQQNPGSQPHAMQSLPNHKSGSNNGNPSPQVVPSNPYVLTRRPSNGVYPP 284
Query: 391 SGNYEPISTG 420
+ + IS G
Sbjct: 285 ENSVQNISQG 294
>At3g49050.1 68416.m05358 lipase class 3 family protein /
calmodulin-binding heat-shock protein, putative
calmodulin-binding heat-shock protein, Nicotiana
tabacum, PIR:T04107
Length = 477
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 196 PGQVHVVDHNPDYYPGQV-HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIA 351
P Q + D Y PG++ H+V+ P G+ V + VP DG +H+V++
Sbjct: 272 PEQKMLKDPRRLYAPGRMYHIVERKP-CRLGRYPPVVKTAVPVDGRFEHIVLS 323
>At5g18560.1 68418.m02194 AP2 domain-containing transcription
factor, putative AP2/EREBP-like transcription factor
LEAFY PETIOLE, Arabidopsis thaliana, EMBL:AF216581
Length = 348
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 148 YNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQ--VHVVDHNPDY 276
Y P VH + NP+ + V ++N + P V+DH+P Y
Sbjct: 112 YTPTDVHTILTNPNLHSLIVSPYNNNQSFLPNSSPQFVIDHHPHY 156
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 106 YNPGQVHVVNYNPDYNPGQVHVVDHNPDY--NPGQVHVVDHNPDY 234
Y P VH + NP+ + V ++N + N V+DH+P Y
Sbjct: 112 YTPTDVHTILTNPNLHSLIVSPYNNNQSFLPNSSPQFVIDHHPHY 156
>At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 299
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 100 PDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDYN 279
P+YN VN+ P+YNP Q N N QV + N + + +H+ Y
Sbjct: 244 PEYN------VNFRPEYNPNQ------NQIQNQNQVQIQIQNQSFKRENISEYEHHHGYP 291
Query: 280 P 282
P
Sbjct: 292 P 292
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 355 PDPFFSQPSNGPSG--NYEPISTGPAFVDFNHPNYPPKRYDXPLAR 486
P P S P N P ++ P + P+ +N P PP YD P R
Sbjct: 357 PYPQQSYPPNPPRQPPSHPPPGSAPSQQYYNAPPTPPSMYDGPGGR 402
>At2g02490.1 68415.m00188 hydroxyproline-rich glycoprotein family
protein related to LENOD2 [Lupinus luteus]
gi|296830|emb|CAA39050; and genefinder
Length = 302
Score = 27.9 bits (59), Expect = 5.0
Identities = 33/134 (24%), Positives = 51/134 (38%), Gaps = 5/134 (3%)
Frame = +1
Query: 82 HVVDHNPDYNPGQVHVVNYN--PDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQV-- 249
H V +P + P Q ++ N P P H V +P + P Q + N YPG
Sbjct: 52 HPVPPSPGHPPHQNAKISVNQYPSVFPIP-HPVPPSPGHPPHQNTKISVNQ--YPGVFPI 108
Query: 250 -HVVDHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPA 426
H V +P + P Q + + P V P P P + P N ++ P
Sbjct: 109 PHPVPPSPGHPPHQNAKISVNQYPG-------VFPIPHPVSPSPGHPPHQNEISVNQYPH 161
Query: 427 FVDFNHPNYPPKRY 468
+ +HP P ++
Sbjct: 162 ILPISHPVPPSLKH 175
>At1g09280.2 68414.m01038 expressed protein contains Pfam profile:
PF03959 domain of unknown function (DUF341)
Length = 575
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 565 LENIIRLIIISPSFKIAYLYETFTSHHGREGXRIAWVDNWD 443
L+NI L+ I ++ ++Y+T T G + AW+ + D
Sbjct: 374 LKNIAELVFIDAPHELQFIYQTATPPSGVCNKKFAWLVSSD 414
>At1g09280.1 68414.m01037 expressed protein contains Pfam profile:
PF03959 domain of unknown function (DUF341)
Length = 581
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 565 LENIIRLIIISPSFKIAYLYETFTSHHGREGXRIAWVDNWD 443
L+NI L+ I ++ ++Y+T T G + AW+ + D
Sbjct: 380 LKNIAELVFIDAPHELQFIYQTATPPSGVCNKKFAWLVSSD 420
>At4g26750.1 68417.m03854 hydroxyproline-rich glycoprotein family
protein
Length = 421
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 376 PSNGPSGNYEPISTGPAFVDFNHP-NYPPKRYDXP 477
PS+ PS ++ P TGP+ + HP ++ P D P
Sbjct: 236 PSSYPSNDHLPPPTGPSDSPYPHPYSHQPYHQDPP 270
>At4g11510.1 68417.m01849 expressed protein ; expression supported
by MPSS
Length = 85
Score = 27.5 bits (58), Expect = 6.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 316 EHHYCPPREPGLDYSQGCDQPR 251
+H CPP +P Y +GC++ +
Sbjct: 49 DHGNCPPDQPANPYHRGCEKSK 70
>At5g59460.1 68418.m07452 scarecrow-like transcription factor 11
(SCL11) identical to cDNA scarecrow-like 11 (SCL11)
mRNA, partial cds gi:4580526
Length = 172
Score = 27.1 bits (57), Expect = 8.7
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Frame = +1
Query: 217 DHNPDYYPGQVHVVDHNPDYNPGQVHVVDNSGVPSDGNSD--HVVIANPDPFFSQPSNGP 390
D P G++ NP + N G PS +S+ + P+ +PS
Sbjct: 54 DPQPGALLGRMSFQSFNPSIEKLHEEAI-NGGNPSSSSSNGGKKSFSEPESSKVEPSGET 112
Query: 391 SGNYEPISTGPAFVDFNHPNYPPKRYDXP 477
G+ + + + N PN P+ +D P
Sbjct: 113 DGDLKRKQSEVVSEEQNRPNKSPRSFDKP 141
>At1g15940.1 68414.m01913 expressed protein similar To
androgen-induced prostate proliferative shutoff
associated protein (GI:4559410) [Homo sapiens]
Length = 990
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/68 (25%), Positives = 25/68 (36%)
Frame = +1
Query: 259 DHNPDYNPGQVHVVDNSGVPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDF 438
D PD + +N V + + + A +P +NG N EP + G
Sbjct: 769 DAEPDRMEDHQELPENHNVETKTDGEEQEAAK-EPTAESKTNGEEPNAEPETDGKEHKSL 827
Query: 439 NHPNYPPK 462
PN PK
Sbjct: 828 KEPNAEPK 835
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,901,426
Number of Sequences: 28952
Number of extensions: 300655
Number of successful extensions: 845
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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