Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K02
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    27   1.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   2.6  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   3.4  
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    25   5.9  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   7.8  

>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 263 GGLGSRVQVGLETSIAPWLLSKLALGPLPPFL 168
           GGL  R    ++T  A W+LS L L    PF+
Sbjct: 249 GGLNGRTNKDVDTCYAYWVLSSLKLLDALPFI 280


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 299  RETARKFVHLVNYTHTDLPRNVRQGLTLVTKHMSFAADSLLKTV 430
            ++T  KFV + N+ HTDL   +   +T     +SF    L++ +
Sbjct: 916  KKTGHKFVRINNHEHTDLQEYIGTYVTDDNGSLSFREGVLVEAL 959


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 315  NSCISSTTPTRTCLETYAKA*RLLPSTCLL 404
            NSC S+T+ TR C + Y+   R+  + C L
Sbjct: 1241 NSCNSTTSNTRICEKCYSLVPRMSCTFCCL 1270


>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 370 LAYVSRQVRVGVVDEMHEFPRGFPGQQHDQLLERGGAGLVLG--FRL 236
           L Y+  ++R     +  EF RG+ GQQ + LL      L  G  FRL
Sbjct: 50  LGYLFERLRSFTSLKETEFQRGYAGQQSEGLLTHHSKSLKSGRPFRL 96


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +2

Query: 308 ARKFVHLVNYTHTDL-PRNVRQGLTLVTK--HMSFAADSLLKTVPVETAMVEIKG 463
           A  F+HL+ + H D+ P NV     L+T+  ++      L  ++PV ++MV+++G
Sbjct: 404 ALNFIHLLEFVHLDVKPSNV-----LITRDGNLKLGDFGLATSLPV-SSMVDLEG 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,542
Number of Sequences: 5004
Number of extensions: 44603
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)