BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_K02 (571 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 27 1.5 SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.6 SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 3.4 SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch... 25 5.9 SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 7.8 >SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit Cwg2|Schizosaccharomyces pombe|chr 1|||Manual Length = 355 Score = 27.5 bits (58), Expect = 1.5 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 Query: 263 GGLGSRVQVGLETSIAPWLLSKLALGPLPPFL 168 GGL R ++T A W+LS L L PF+ Sbjct: 249 GGLNGRTNKDVDTCYAYWVLSSLKLLDALPFI 280 >SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual Length = 4717 Score = 26.6 bits (56), Expect = 2.6 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +2 Query: 299 RETARKFVHLVNYTHTDLPRNVRQGLTLVTKHMSFAADSLLKTV 430 ++T KFV + N+ HTDL + +T +SF L++ + Sbjct: 916 KKTGHKFVRINNHEHTDLQEYIGTYVTDDNGSLSFREGVLVEAL 959 >SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1323 Score = 26.2 bits (55), Expect = 3.4 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 315 NSCISSTTPTRTCLETYAKA*RLLPSTCLL 404 NSC S+T+ TR C + Y+ R+ + C L Sbjct: 1241 NSCNSTTSNTRICEKCYSLVPRMSCTFCCL 1270 >SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosaccharomyces pombe|chr 2|||Manual Length = 148 Score = 25.4 bits (53), Expect = 5.9 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -1 Query: 370 LAYVSRQVRVGVVDEMHEFPRGFPGQQHDQLLERGGAGLVLG--FRL 236 L Y+ ++R + EF RG+ GQQ + LL L G FRL Sbjct: 50 LGYLFERLRSFTSLKETEFQRGYAGQQSEGLLTHHSKSLKSGRPFRL 96 >SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces pombe|chr 2|||Manual Length = 581 Score = 25.0 bits (52), Expect = 7.8 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%) Frame = +2 Query: 308 ARKFVHLVNYTHTDL-PRNVRQGLTLVTK--HMSFAADSLLKTVPVETAMVEIKG 463 A F+HL+ + H D+ P NV L+T+ ++ L ++PV ++MV+++G Sbjct: 404 ALNFIHLLEFVHLDVKPSNV-----LITRDGNLKLGDFGLATSLPV-SSMVDLEG 452 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,222,542 Number of Sequences: 5004 Number of extensions: 44603 Number of successful extensions: 148 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 148 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 242064240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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