Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_K02
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 29 2.0
11_05_0091 - 18982390-18982948,18983088-18983173 29 2.6
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 29 3.4
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 29 3.4
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 28 4.6
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 28 6.0
10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010 28 6.0
09_06_0280 + 22010270-22011407,22011890-22013097 28 6.0
12_02_0246 - 16393943-16394410 27 8.0
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 8.0
04_01_0344 + 4517730-4517918,4518212-4518359,4518454-4518569,451... 27 8.0
>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
Length = 355
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +3
Query: 240 LNPRTKPAPPRSRSW 284
LNPR PAPP +R+W
Sbjct: 77 LNPRATPAPPSARTW 91
>11_05_0091 - 18982390-18982948,18983088-18983173
Length = 214
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 237 NLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTP 341
+L P P+P + CC G+ NS ++S TP
Sbjct: 130 SLQPSPSPSPTPDSATPCCLTGRLADNSTLNSDTP 164
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +2
Query: 95 RRITRQALAEAKAIKEQINILVYVAEMVATDPVLAWTKAKELYSSLSQPEPE 250
RRI R E K +KEQIN+L ++ T+ ++ K L LSQ E E
Sbjct: 382 RRIDRPETNEEKDLKEQINLL--RVDLKETEANISDEDKKGLSEKLSQMERE 431
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -1
Query: 412 VGCKRHVLGNKRQALAYVSRQVRVGVVDEMHEFPRGFPGQQH 287
VG HVLG Q A +R+ V+DE E RGF Q H
Sbjct: 782 VGTPCHVLG-MLQGRALCPDHIRMFVLDEADEVLRGFKDQIH 822
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 26 GETGRAKAAQAVQHGARLKRKLQRRITRQALAEA 127
G+ + QAV HG +LK +L R +TR+ E+
Sbjct: 640 GQVYHYPSFQAVTHGDKLKHELSRDLTRETAWES 673
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 385 YQAHVFCSRLSSQDGTRGNCYGRDQRLEGKTPNSITAVTIHIQ 513
Y + S +S Q G GNC + G T +S+ + H+Q
Sbjct: 1402 YLLLLVASEVSLQSGDHGNCIAQATEALGVTSSSVDSFFAHLQ 1444
>10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010
Length = 520
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 451 DHSSFHGYRLEKRVGCKRHVLGNKRQALAYVSRQ-VRVGVVDEMHEFP 311
DH S HG++ K GC+ ++G + + + V+ + + + E HE P
Sbjct: 67 DHHSKHGHKKRKHSGCE--IVGEETRKVCNVTMEHLEKSSLSEEHEAP 112
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 273 SRSWSCC*PGKPRGNSCISSTTPTRTCLETY 365
+ +WSC PG+ R ++CIS+ + + Y
Sbjct: 279 ANNWSCPTPGEARRSACISNNSYCHNVTDNY 309
>12_02_0246 - 16393943-16394410
Length = 155
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 421 QDGTRGNCYGRDQRLEGKTPNSITAVTIHIQD 516
QDG N + RL+G TP S+ A + + D
Sbjct: 23 QDGLAPNGVHQGHRLDGSTPESLHAAGVRVGD 54
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 243 NPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCL 356
+PR P PP + SW C P P G +SS TCL
Sbjct: 288 SPRNGPLPPNAPSW-CEAPFDPEG--LLSSLMAIVTCL 322
>04_01_0344 +
4517730-4517918,4518212-4518359,4518454-4518569,
4518917-4518979,4519084-4519152,4519317-4519352
Length = 206
Score = 27.5 bits (58), Expect = 8.0
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 198 LGQKPRSYTRL*ANLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCL 356
+G K Y+ + + TKP +R WS C RGN S+ TR L
Sbjct: 105 MGDKDMDYSSI--EYHKPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNL 155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,960,819
Number of Sequences: 37544
Number of extensions: 351847
Number of successful extensions: 1224
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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