Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K02
         (571 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62080.1 68418.m07791 protease inhibitor/seed storage/lipid t...    28   5.0  
At2g20300.1 68415.m02371 protein kinase family protein contains ...    27   8.8  
At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ...    27   8.8  

>At5g62080.1 68418.m07791 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           tapetum-specific protein a9 precursor {Brassica napus}
           SP|Q05772; contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234; supported by
           full-length cDNA Ceres:27795
          Length = 95

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 300 GKPRGNSCISSTTPTRTCLETYAKA*RLLPSTCLLQP 410
           G+P    C +  +  R CL    +A   LPS C L P
Sbjct: 52  GRPNSECCAALQSTNRDCLCNALRAATSLPSLCNLPP 88


>At2g20300.1 68415.m02371 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 744

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +3

Query: 408 PTLFSRRYPWKLLWSRSKAGRKNSKFYYSSYNPH--PRPILNTSPFSSR 548
           P  F+R +P  L ++RSKA + +  F++   NP   P P    SP  SR
Sbjct: 21  PICFARLFPMSLPFTRSKAHQMH--FFHPYLNPSVAPTPSPAFSPNPSR 67


>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
           Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
           (GI:1658504) [Drosophila melanogaster]
          Length = 444

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 317 ISSRFPWSATRPTPRAWRGGLGSRVQVGLETS 222
           I++ FP   +RP+    +G LGSR++ GL  S
Sbjct: 135 INNDFPQLTSRPSSAGSQGQLGSRLKQGLGIS 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,163,916
Number of Sequences: 28952
Number of extensions: 257006
Number of successful extensions: 790
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)