Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_K01
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-24|CAB11568.2|  366|Caenorhabditis elegans Hypothetical p...    30   1.4  
AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z69635-2|CAA93462.1|  555|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z69635-1|CAA93459.1|  515|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ...    28   4.4  

>Z98866-24|CAB11568.2|  366|Caenorhabditis elegans Hypothetical
           protein Y49E10.25 protein.
          Length = 366

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 258 KLLLEGQPNVVEYAYSLWYRSGEDIVXVYFPIEFRLLFNEDPV 386
           KL+  GQP V +Y ++ W+          FP  FR++ + DP+
Sbjct: 260 KLVTFGQPRVADYDHAAWH-------DATFPYSFRVINSRDPI 295


>AF047658-1|AAC04418.2|  348|Caenorhabditis elegans Hypothetical
           protein K03H6.2 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 258 KLLLEGQPNVVEYAYSLWYRS 320
           KLL  GQP   +YAYS W+++
Sbjct: 227 KLLTAGQPRTGDYAYSNWHQN 247


>Z69635-2|CAA93462.1|  555|Caenorhabditis elegans Hypothetical
           protein F19B6.1b protein.
          Length = 555

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 434 RRNYAGDRASFGAGQTKTGPRVSWKLYPIWYKNK 535
           RR  +G RA      TKTG ++  K  P WY  K
Sbjct: 64  RRTMSGGRAEHHLLTTKTGKKIYTKGRPPWYDKK 97


>Z69635-1|CAA93459.1|  515|Caenorhabditis elegans Hypothetical
           protein F19B6.1a protein.
          Length = 515

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 434 RRNYAGDRASFGAGQTKTGPRVSWKLYPIWYKNK 535
           RR  +G RA      TKTG ++  K  P WY  K
Sbjct: 24  RRTMSGGRAEHHLLTTKTGKKIYTKGRPPWYDKK 57


>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
           protein C07H6.3 protein.
          Length = 1378

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -3

Query: 457 SVASVIPSSNQAEEQVHHV*LVITTGSSLNNSRNSIGK*TXTMSSPDLYQ 308
           S  SV   SN + + + H+ L   T SSLN  R++I      ++ P+L Q
Sbjct: 814 SSGSVGSGSNGSVQSIEHI-LKACTSSSLNEKRDAIVNLNQVITDPNLCQ 862


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,114,438
Number of Sequences: 27780
Number of extensions: 226454
Number of successful extensions: 479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)