Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J24
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   6.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.1  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   8.0  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   8.0  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 255 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 359
           Y  +ARH L    + FD HTF  +   FY T  RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 78  RFLDIFEKTFVQSLQKGKFESYGKKIAFS-SWKSIFFVGNYWQENADL 218
           RF+DIFE+TF  S +  KF S     A    WK+   +   W+E   L
Sbjct: 528 RFIDIFEQTF-SSKKNAKFISMASTSARRFRWKTCLKI---WKEACKL 571


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 116  PTERQIRIVWQENCLFIVEINFLCRKLLARERRSV*RRSY-KGLSTI 253
            P E  IRIV   NC+F  +   L +     + +    R Y +GL T+
Sbjct: 871  PREIDIRIVDFANCVFAEDKELLAKATCPPQHKDTYDRGYVRGLRTL 917


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 78  RFLDIFEKTFVQSLQKGKFESYGKK 152
           +FL+I+ +T +  L  G  E  GKK
Sbjct: 606 QFLEIYNETIIDLLASGNEEEKGKK 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,893
Number of Sequences: 5004
Number of extensions: 51432
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)