Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J24
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0300 - 22126177-22126434,22126892-22127274,22128596-22129064     29   2.0  
01_05_0655 - 23972488-23973152,23973193-23973241,23973883-239739...    29   3.5  
09_02_0530 + 10285844-10287217                                         28   4.7  
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332...    28   6.2  
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247...    28   6.2  
10_08_0355 - 17131178-17131268,17131376-17131429,17131521-171316...    27   8.2  

>09_06_0300 - 22126177-22126434,22126892-22127274,22128596-22129064
          Length = 369

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 192 FRQRKLISTMKRQFSCHTIRICLSVGTVRKSFQKCPRTVLLRSSLRCVDCS 40
           +RQ  +++ +K Q SC +     SVG V  ++    + +L  S  + +DCS
Sbjct: 141 WRQHGVVTPVKDQGSCGSCWAFSSVGAVESAYAIATKKLLRLSEQQVLDCS 191


>01_05_0655 -
           23972488-23973152,23973193-23973241,23973883-23973940,
           23974184-23974215,23975961-23976040,23976509-23977898
          Length = 757

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +2

Query: 35  GQLQSTQRKELRSNTVLGHF*KDFRTVPTERQIRIVWQENCLFIVEINFLCRKLLARER 211
           G+L + Q   LRSN +LG    D   +P   Q+R+++ +N L    I     KL A ER
Sbjct: 94  GRLTNLQVLSLRSNRILGGIPDDVLQLP---QLRLLFLQNNLLSGAIPPAVSKLAALER 149


>09_02_0530 + 10285844-10287217
          Length = 457

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 160 FHRGNQFSLSETIGKRTPICMKKKLQRIINDLMK 261
           FH G QF +   +  R P C  +K+   + DL K
Sbjct: 374 FHGGLQFQIEHHLFPRLPRCHLRKVSPFVRDLCK 407


>06_01_0469 +
           3322886-3323564,3324033-3324953,3325025-3325155,
           3325237-3325317,3328173-3328820
          Length = 819

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 81  TVLLRSSLRCVDCSCPAFERMG 16
           TVLL +S   + C C  FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409


>03_06_0337 +
           33224333-33224479,33224603-33224663,33224740-33224776,
           33225237-33225367,33225447-33225590,33225686-33225776,
           33225973-33226106,33226234-33226373,33227328-33227426,
           33227520-33227602,33227690-33227744,33227826-33227937,
           33228274-33228766,33228881-33229094,33229203-33229273,
           33229733-33229901,33229991-33230120,33230556-33230968,
           33231059-33231262
          Length = 975

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +2

Query: 371 SAIYRIVGYINAFKHYLKPYPQEKLHFVGVEINDVVVEKLVTFFDYSQFDATNSVFLTKK 550
           S ++R+ G I        P P+E++   G+E +    +     F   +    + V L +K
Sbjct: 221 SEVFRLAGEIGTVVSVSYPLPKEEMELHGLERDGCTTDAAAVLFASVKSAWDSVVHLHRK 280

Query: 551 EIK 559
           E+K
Sbjct: 281 EVK 283


>10_08_0355 -
           17131178-17131268,17131376-17131429,17131521-17131663,
           17131812-17132096,17132168-17132301,17132383-17132556,
           17132639-17132707,17132814-17132878,17133441-17133589,
           17133747-17133989,17134119-17134255,17134340-17134561,
           17134661-17134827,17136680-17136819
          Length = 690

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +3

Query: 39  NYNLHSV---KNYEAIRFLDIFEKTFVQSLQK 125
           NYN+  V   KN+ A+R  DIF KT  +  +K
Sbjct: 521 NYNIAIVSLKKNFNAVRLEDIFSKTVQEPSEK 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,745,064
Number of Sequences: 37544
Number of extensions: 296050
Number of successful extensions: 766
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)