BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_J24 (578 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68 SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7 SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 28 6.3 SB_59320| Best HMM Match : Exo_endo_phos (HMM E-Value=0.29) 27 8.4 SB_54673| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4 SB_22121| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4 SB_17390| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1e-13) 27 8.4 SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4 SB_1162| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3e-08) 27 8.4 SB_51484| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036) 27 8.4 SB_42310| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.4 SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11) 27 8.4 SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.4 SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44) 27 8.4 SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4 >SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1548 Score = 31.1 bits (67), Expect = 0.68 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = +1 Query: 268 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 360 L+ CS+Q L +T T P+R++F++PH T Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450 >SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1384 Score = 29.1 bits (62), Expect = 2.7 Identities = 19/48 (39%), Positives = 23/48 (47%) Frame = +3 Query: 144 GKKIAFSSWKSIFFVGNYWQENADLYEEEVTKDYQRSYEIVARHVLGA 287 G +IA K F +G L +VTKD SYE VA +V GA Sbjct: 1111 GLRIASGQGKGQFLLGKDNSGRDILIIAQVTKDVSGSYECVASNVGGA 1158 >SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) Length = 129 Score = 27.9 bits (59), Expect = 6.3 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%) Frame = +3 Query: 381 TGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 533 T + +TLTHS++T + N S L L+ N +HS LT + L LT+ Sbjct: 6 TLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57 >SB_59320| Best HMM Match : Exo_endo_phos (HMM E-Value=0.29) Length = 243 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 28 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 78 >SB_54673| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 337 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 31 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 81 >SB_22121| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 80 Score = 27.5 bits (58), Expect = 8.4 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = -3 Query: 231 LLLHTDRRSLANSFRQRKLISTMKRQ 154 L L+ +R +AN +R+ K+ ST+KR+ Sbjct: 7 LKLNIGKRPIANKYREGKMKSTLKRE 32 >SB_17390| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1e-13) Length = 851 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 447 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 497 >SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 917 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 96 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 146 >SB_1162| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3e-08) Length = 285 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 175 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 225 >SB_51484| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036) Length = 283 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 68 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 118 >SB_42310| Best HMM Match : RVT_1 (HMM E-Value=0) Length = 940 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 96 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 146 >SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11) Length = 509 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 388 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 438 >SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0) Length = 1821 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 581 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 631 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 1042 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 1092 >SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44) Length = 759 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 146 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 196 >SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1457 Score = 27.5 bits (58), Expect = 8.4 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%) Frame = +2 Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493 SRP I+S +YR + Y N F+ +K E K H + ++N +++K V Sbjct: 293 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 343 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,751,509 Number of Sequences: 59808 Number of extensions: 367549 Number of successful extensions: 995 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 881 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 993 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1385833362 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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