Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J24
(578 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.68
SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11) 28 6.3
SB_59320| Best HMM Match : Exo_endo_phos (HMM E-Value=0.29) 27 8.4
SB_54673| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_22121| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_17390| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1e-13) 27 8.4
SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
SB_1162| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3e-08) 27 8.4
SB_51484| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036) 27 8.4
SB_42310| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.4
SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11) 27 8.4
SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.4
SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44) 27 8.4
SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1548
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 268 LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 360
L+ CS+Q L +T T P+R++F++PH T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450
>SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1384
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +3
Query: 144 GKKIAFSSWKSIFFVGNYWQENADLYEEEVTKDYQRSYEIVARHVLGA 287
G +IA K F +G L +VTKD SYE VA +V GA
Sbjct: 1111 GLRIASGQGKGQFLLGKDNSGRDILIIAQVTKDVSGSYECVASNVGGA 1158
>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
Length = 129
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 381 TGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 533
T + +TLTHS++T + N S L L+ N +HS LT + L LT+
Sbjct: 6 TLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57
>SB_59320| Best HMM Match : Exo_endo_phos (HMM E-Value=0.29)
Length = 243
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 28 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 78
>SB_54673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 337
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 31 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 81
>SB_22121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 231 LLLHTDRRSLANSFRQRKLISTMKRQ 154
L L+ +R +AN +R+ K+ ST+KR+
Sbjct: 7 LKLNIGKRPIANKYREGKMKSTLKRE 32
>SB_17390| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1e-13)
Length = 851
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 447 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 497
>SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 96 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 146
>SB_1162| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3e-08)
Length = 285
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 175 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 225
>SB_51484| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036)
Length = 283
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 68 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 118
>SB_42310| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 940
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 96 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 146
>SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11)
Length = 509
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 388 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 438
>SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1821
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 581 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 631
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 1042 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 1092
>SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44)
Length = 759
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 146 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 196
>SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = +2
Query: 353 SRPCILSAIYR---IVGYINAFKHYLKPYPQE-KLHFVGVEINDVVVEKLV 493
SRP I+S +YR + Y N F+ +K E K H + ++N +++K V
Sbjct: 293 SRPFIVSVVYRPESPIEYFNRFEELIKAVDDEDKEHVILGDLNCCLLKKKV 343
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,751,509
Number of Sequences: 59808
Number of extensions: 367549
Number of successful extensions: 995
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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