Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J24
         (578 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR) domai...    28   3.9  
At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1) domain...    28   3.9  
At4g16144.1 68417.m02448 expressed protein                             27   9.0  
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami...    27   9.0  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   9.0  

>At4g04110.1 68417.m00581 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 239

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 118 YRKANSNRMARKLPFHRGNQFSLSETIGKRTPICMKKKLQRIIND-LMKLSL 270
           ++K   NR   ++   R     ++ T+G  + IC     + I ND L+KL+L
Sbjct: 155 FKKTCQNRTEDEINLRRRALIDVANTLGYHSTICKANMTKEITNDVLVKLNL 206


>At1g25300.1 68414.m03140 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein similar to unknown protein
           GI:4262226 from [Arabidopsis thaliana] contains Pfam
           profile PF00564: PB1 domain
          Length = 272

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 419 LKPYPQEK-LHFVGVEINDVVVEKLVTFFDY 508
           + P P EK LH++G E   V+V + ++F D+
Sbjct: 21  IMPLPPEKSLHYIGGETRLVIVPRGISFLDF 51


>At4g16144.1 68417.m02448 expressed protein
          Length = 390

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 133 SNRMARKLPFHRGNQFSL-SETIGKRTPICMKKKLQRIINDLMKL 264
           S+ ++  +PFHR  Q SL  E +G R      K+L+ +IN+L  L
Sbjct: 54  SSLISETIPFHRDYQASLPQERLGSR------KRLRAVINELESL 92


>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
           protein / RNA recognition motif (RRM)-containing protein
           similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
           {Escherichia coli O157:H7}; contains Pfam profiles
           PF01743: polyA polymerase family protein, PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 881

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 178 FSLSETIGKRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPS 318
           FS  E IGK+ PIC       I ND++++S    S Q+   +T T S
Sbjct: 128 FSRCEIIGKKFPICH----VHIGNDMIEVSSFSTSAQNSLRNTRTGS 170


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 79  GSWTFLKRLSYSPY 120
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,376,482
Number of Sequences: 28952
Number of extensions: 254783
Number of successful extensions: 701
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)