Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J23
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    30   0.30 
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   3.7  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   3.7  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    26   4.9  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    25   6.5  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   8.6  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.6  

>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 12  FFFFYCKQTFISIINKKNVYDCFKINDSVSKVL 110
           F+  + K   I ++   ++YDC+K N+SV  VL
Sbjct: 46  FWTIWLKSLVIMVLLFTHIYDCYKTNESVWNVL 78


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 208 RSGMR*IWYSNCTSESAGCGSFFIYFDKCLLEGFRHYYTVT 330
           R  MR I   N  S++A C   +  FD   LEG   Y  V+
Sbjct: 599 RMPMRTISEGNLDSDAAKCRIMYTKFDSICLEGIVGYQRVS 639


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 5  SFFFFFLLQTNVYFHH 52
          +FFFF+L +  VYF+H
Sbjct: 38 NFFFFYLCRCCVYFYH 53


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 392 GLRSNLLFISNFGISNF-TFLLVGLSLNTSSRRPFSPCFVQHRRYTRPVWSEVGTTYENQ 568
           G+  NLL +S+ G   F +++L   +L  S  + F    V  RR+T  + + +    +  
Sbjct: 560 GVDRNLLLVSS-GSGEFKSYVLFKNNLVFSETKHFGTTPVSFRRFTMNIGTYIICNNDCP 618

Query: 569 NSLYGKFDKLCF 604
           + +YG    LC+
Sbjct: 619 HMVYGFNGALCY 630


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 589 EFAVQGILVFVSCSYFRPNWTGISS 515
           EF     L F +  Y +PNW G++S
Sbjct: 206 EFLETNFLKFFNNEYRKPNWKGMAS 230


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 232 YSNCTSESAGCGSFFIYFDKCLLEGFRHYYTVT 330
           Y NC S+    GS F ++ K       HY + T
Sbjct: 571 YLNCNSKPMSLGSMFEHYRKLARRLISHYLSKT 603


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = +3

Query: 6   VFFFFFYCKQT--FISII 53
           +FFF +YCKQ   FIS +
Sbjct: 73  IFFFVYYCKQALEFISTV 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,299
Number of Sequences: 5004
Number of extensions: 57811
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)