Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J23
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1152 + 9170628-9171899 36 0.025
05_06_0044 - 25150322-25151260 32 0.31
11_02_0012 - 7346282-7347136,7347234-7347593 29 2.2
07_03_1796 + 29609818-29610274,29610427-29610908,29611547-296117... 29 2.9
06_03_1196 + 28316186-28316290,28317529-28317633,28317725-283177... 29 2.9
04_04_1097 - 30859963-30860302,30862130-30863058 29 2.9
11_02_0011 - 7337618-7338496,7338596-7338991 29 3.8
08_01_0778 + 7548307-7549220,7551682-7552021 29 3.8
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666 27 8.7
06_03_1027 + 27000498-27000503,27001325-27002271,27002359-27002698 27 8.7
06_03_0902 - 25806912-25807190,25807876-25808094,25809469-258097... 27 8.7
06_01_0892 - 6827510-6827590,6829348-6830412 27 8.7
05_04_0123 + 18210069-18213737 27 8.7
02_01_0553 - 4078792-4079131,4079846-4080771 27 8.7
01_01_0922 + 7278912-7279274,7281449-7281572,7282489-7282604,728... 27 8.7
>01_01_1152 + 9170628-9171899
Length = 423
Score = 35.9 bits (79), Expect = 0.025
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -1
Query: 441 KLEMPKFEIKSKLDLKPLRPKFGVSKIF--NEPAPNIVKGDSVVVSEAFQEAFIKVDE 274
+L +PKF+ K + K K GV++ F + + + GD + ++E + +A I+VDE
Sbjct: 311 RLMVPKFKFSFKFEAKSDMRKLGVTRAFAGGDFSGMVTGGDGLFIAEVYHQATIEVDE 368
>05_06_0044 - 25150322-25151260
Length = 312
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Frame = -1
Query: 441 KLEMPKFEIKSKLDLKPLRPKFGVSKIFNEPAPNIVKG------DSVVVSEAFQEAFIKV 280
+L++PKFE+ K++ L +FG+ F A N G VS + F+ V
Sbjct: 195 ELKIPKFEVSLKVEASRLLREFGLDLPFLPAADNSFSGMLLDPPQGTAVSSLLHQCFVNV 254
Query: 279 DEE 271
+EE
Sbjct: 255 NEE 257
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -2
Query: 209 LAHPLVFKVDHPFAYFILYE--DKIIFGWYL 123
L P+ F DHPFA+F++ E D ++F ++
Sbjct: 367 LTSPVDFVADHPFAFFVVEEKSDAVLFAGHV 397
>07_03_1796 +
29609818-29610274,29610427-29610908,29611547-29611755,
29612111-29612177,29612252-29612302
Length = 421
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 519 RRCWTKQGEKGLLEDVFRLRPTNRK-VKLEMPK-FEIKSKLDLK 394
R+ W+++ EK LLE V + N K +K+ P FE +S +DLK
Sbjct: 366 RKKWSEKQEKTLLEGVEKYGKGNWKDIKMAYPDVFEDRSTVDLK 409
>06_03_1196 +
28316186-28316290,28317529-28317633,28317725-28317796,
28318023-28318259,28318608-28318718,28318810-28318923,
28319272-28319373,28320238-28320306,28320447-28320553,
28321128-28321224,28321347-28321466,28321663-28321847,
28322065-28322353
Length = 570
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Frame = +2
Query: 488 PFSPCFVQHR-RYTRP---VWSEVGTTYENQNS 574
PF P ++ RY RP WS V TTY N NS
Sbjct: 464 PFDPYLLKESDRYMRPNFEYWSMVKTTYNNYNS 496
>04_04_1097 - 30859963-30860302,30862130-30863058
Length = 422
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 368 ETPNLGLKGLRSNLLFISNFGISNFTFLLVGLSLNTSSRRPFSPCFVQHRRYTRPV 535
++ NL + G +S + I++FG++ G++ T + R +P +QHR Y + V
Sbjct: 269 KSDNLLISGDKS--IKIADFGVARIEVKTEGMTPETGTYRWMAPEMIQHRPYDQKV 322
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 221 RIPDLAHPLVFKVDHPFAYFILYE 150
R+ +++P F DHPFA+F++ E
Sbjct: 382 RLLSMSYPEDFVADHPFAFFVVEE 405
>08_01_0778 + 7548307-7549220,7551682-7552021
Length = 417
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 368 ETPNLGLKGLRSNLLFISNFGISNFTFLLVGLSLNTSSRRPFSPCFVQHRRYTRPV 535
++ NL + G +S + I++FG++ G++ T + R +P +QHR Y + V
Sbjct: 264 KSDNLLISGDKS--IKIADFGVARIEVKTEGMTPETGTYRWMAPEVIQHRPYDQKV 317
>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
Length = 145
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 27 CKQTFISIINKK-NVYDCFKINDSVSKVL 110
CKQTF+ + KK + Y FKI+D +V+
Sbjct: 20 CKQTFLELQRKKSHRYVIFKIDDKCKEVV 48
>06_03_1027 + 27000498-27000503,27001325-27002271,27002359-27002698
Length = 430
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 416 ISNFGISNFTFLLVGLSLNTSSRRPFSPCFVQHRRYTRPV 535
I++FG++ G++ T + R +P +QHR Y V
Sbjct: 291 IADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYDHKV 330
>06_03_0902 -
25806912-25807190,25807876-25808094,25809469-25809711,
25809810-25809974,25810141-25810721,25810940-25811048,
25811158-25811250,25811474-25811535,25811895-25811967,
25812879-25813007,25814107-25814229
Length = 691
Score = 27.5 bits (58), Expect = 8.7
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -1
Query: 579 YKEFWFS*VVPTSDQTGRVYRRCWTKQGEKG-LLEDVFRLRPTNRKVKLEMPKFEIKSKL 403
Y E + + +++T RV T GEK LLE++ R ++ + +FE KSK
Sbjct: 434 YSEMESNLKIEQNEKT-RVQSEKTTASGEKEMLLEELETKRKEVESLQQHIGEFEAKSKA 492
Query: 402 DLKPL 388
D+K L
Sbjct: 493 DIKVL 497
>06_01_0892 - 6827510-6827590,6829348-6830412
Length = 381
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 231 PYSSHSRPRPPFGFQ 187
PY+ HS+P+P +GF+
Sbjct: 73 PYAHHSKPQPAYGFR 87
>05_04_0123 + 18210069-18213737
Length = 1222
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 452 LVGLSLNTSSRRPFSPCFVQHRRYTRPVWSEVGTTYENQNSLY 580
+VGL + + P P F++H RY S + T E ++LY
Sbjct: 574 VVGLHIFGIEKFPVEPAFMKHLRYLDLSGSYINTLPEAASALY 616
>02_01_0553 - 4078792-4079131,4079846-4080771
Length = 421
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 416 ISNFGISNFTFLLVGLSLNTSSRRPFSPCFVQHRRYTRPV 535
I++FG++ G++ T + R +P +QHR Y V
Sbjct: 282 IADFGVARIEVKTEGMTPETGTYRWMAPEMIQHRPYDHKV 321
>01_01_0922 +
7278912-7279274,7281449-7281572,7282489-7282604,
7282683-7282748,7283379-7283413,7283559-7283601,
7284325-7284362,7284448-7284555,7287195-7287252,
7287862-7288003,7288215-7288426,7288544-7288778,
7288874-7288941,7290329-7290602,7291137-7291249,
7291330-7291390,7292170-7292237,7292585-7292622,
7292699-7292888
Length = 783
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 462 RPTNRKVKLEMPKFEIKSKLDLKPLRPKFGVSK-IFNEP 349
R + +K++ + ++ K+D+K +P FG+ K IF +P
Sbjct: 601 RSPSVSIKMQAHEESVRVKMDIKGSQPDFGIDKSIFIKP 639
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,720
Number of Sequences: 37544
Number of extensions: 337625
Number of successful extensions: 809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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