Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J23
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      39   0.004
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      38   0.006
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      33   0.14 
SB_14850| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-30)                 32   0.41 
SB_48464| Best HMM Match : MFS_1 (HMM E-Value=6.9e-13)                 30   1.3  
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_51995| Best HMM Match : Histone (HMM E-Value=3.7e-15)               29   3.9  
SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_55514| Best HMM Match : RVT_1 (HMM E-Value=0.014)                   28   6.7  
SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)               27   8.9  
SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)                27   8.9  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
 Frame = -1

Query: 603 KHSLSNLPYKEFWFS*VVPTSDQTGRVYRRCWTKQGEKGLLEDVFRLRPTNRKVKLEM-- 430
           K  L  LPY +   S V+   D+T  + R       +K  + D+F    + R   +E+  
Sbjct: 177 KCKLLELPYVDTQLSMVLVLPDETEGLARFEQDLTHDK--MTDIFNSVSSQRPADVEVYI 234

Query: 429 PKFEIKSKLDLKPLRPKFGVSKIFNEPAPNI----VKGDSVVVSEAFQEAFIKVDEE 271
           PKF++ S+  L     + G+ K+F++ A +     +  + + VS    +AF++V+EE
Sbjct: 235 PKFKMTSEFKLNEALQELGMKKMFDQAAADFTGISLPPEHLFVSAVLHKAFVEVNEE 291


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = -1

Query: 453 NRKVKLEMPKFEIKSKLDLKPLRPKFGVSKIFNE---PAPNIVKGDSVVVSEAFQEAFIK 283
           N  V++ +PKF +  KL+L+ L    GVS IF+        I     + VS A  +A I+
Sbjct: 231 NTTVEVSIPKFRLSQKLELRSLLQDLGVSDIFDSRKADLSGISAAKGLYVSSAIHKAHIE 290

Query: 282 VDE 274
           V+E
Sbjct: 291 VNE 293


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
 Frame = -1

Query: 486 LLEDVFRLRPTN-RKVKLEMPKFEIKSKLDLKPLRPKFGVSKIFNEPAPNI--VKGDSVV 316
           L E +  LR ++  +V++ +PKF +  +  L       G S +F+    ++  +    +V
Sbjct: 252 LQEAMTSLRNSHPEEVEVTLPKFTLTQEFSLGETLKGMGASDLFSPGKADLSGISAAPLV 311

Query: 315 VSEAFQEAFIKVDEE 271
           VSE   +AF++V+EE
Sbjct: 312 VSEVVHKAFVEVNEE 326


>SB_14850| Best HMM Match : 7tm_1 (HMM E-Value=3.6e-30)
          Length = 307

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 389 KGLRS-NLLFISNFGISNFTFLLVGLSLNTSSRRPFSPCFVQHRRYTRPVWSEVGTTY 559
           KG R+ + +FI N  IS+ TFL++ L++NT +   F    V    Y + VW  +  T+
Sbjct: 46  KGSRTVSDIFIMNLSISDLTFLILSLAVNTPN---FIGNLVYSVGYCKFVWPTITVTF 100


>SB_48464| Best HMM Match : MFS_1 (HMM E-Value=6.9e-13)
          Length = 475

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 413 FISNFGISNFTFLLVGLSLN-TSSRRPFSPCFVQH 514
           FI NFG+S F  LL+G +   T + +   P F +H
Sbjct: 223 FIINFGLSVFALLLIGFTFEITINEKKIPPNFAKH 257


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -1

Query: 405 LDLKPLRPKFGVSKIFNEPAPNIVKGDSVVVSEAFQEAF 289
           +D KP R  F  +  F+E  P++ + +S  V+E F++AF
Sbjct: 636 VDSKP-RVAFDENVTFDERKPSVTQSESSAVTEDFEDAF 673


>SB_51995| Best HMM Match : Histone (HMM E-Value=3.7e-15)
          Length = 138

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 349 RLVEYFRNSKLGPQRFKVQFAFYFK 423
           RL  Y + S+   +RF++QFA+Y++
Sbjct: 76  RLAHYNKKSQSARERFRLQFAYYYQ 100


>SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 193 TKGWARSG-MR*IWYSNCTSESAGCGSFFIYFDKCLLEGFRHYYTVTLDDVWC 348
           T+G ARS  +  +WY + T     CG+  ++        +  Y TVT+  VWC
Sbjct: 164 TRGMARSQYIHAVWYGHSTYTR--CGTVTVHAVWYGHSTYTRYGTVTVHAVWC 214


>SB_55514| Best HMM Match : RVT_1 (HMM E-Value=0.014)
          Length = 684

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 417 IKSKLDLKPLRPKFGVSKIFNEPAPNIVKGDSVVVSEAFQEAFIKVDEE 271
           +K KL +  L+P   VS+ FN+  P     +   V   F +A  K  EE
Sbjct: 408 LKQKLAITVLKPPLAVSENFNDSIPEFPTPNVKGVRFRFTDALAKTLEE 456


>SB_5029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +1

Query: 250 ESAGC---GSFFIYFDKCLLEGFRHYYTVTLDDVWCRLV-EYF 366
           E  GC   G   IY  K + +GF +  +   + +W ++V EYF
Sbjct: 2   EKTGCRYAGGISIYISKAIADGFTYMPSKNNNIIWLKIVKEYF 44


>SB_58680| Best HMM Match : Sas10_Utp3 (HMM E-Value=0.13)
          Length = 660

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 463 KSKHVFKETFLPLLCPTPT-IYPSSLVGSRNNLRK-PEFLVRQIRQ 594
           K    FKETF P+LC     + P    G+   +RK  +FL RQ  Q
Sbjct: 576 KDLPAFKETFSPVLCHLHRFVPPYQRKGAIREVRKDSQFLARQKHQ 621


>SB_19791| Best HMM Match : Reprolysin (HMM E-Value=3.1)
          Length = 616

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 346 CRLVEYFR--NSKLGPQRFKVQFAFYFKFWHLQLHFSISWP 462
           CRL+   R  N  +   +FK++ A + K WH  + F  + P
Sbjct: 563 CRLILDLRHVNKCIAKTKFKMEDAHFMKLWHHLIQFKPTRP 603


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,906,284
Number of Sequences: 59808
Number of extensions: 382130
Number of successful extensions: 872
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)