Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J23
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31170.2 68417.m04425 protein kinase family protein contains ...    30   1.0  
At4g31170.1 68417.m04424 protein kinase family protein contains ...    30   1.0  
At1g02205.2 68414.m00154 CER1 protein identical to maize gl1 hom...    30   1.0  
At1g02205.1 68414.m00153 CER1 protein identical to maize gl1 hom...    30   1.0  
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    29   2.4  
At2g24360.1 68415.m02911 serine/threonine/tyrosine kinase, putat...    29   3.2  
At3g43320.1 68416.m04579 hypothetical protein                          28   5.5  
At1g42740.1 68414.m04939 hypothetical protein                          28   5.5  
At3g19490.1 68416.m02470 sodium hydrogen antiporter, putative si...    27   9.6  
At3g16540.1 68416.m02112 DegP protease, putative contains simila...    27   9.6  

>At4g31170.2 68417.m04425 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 412

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 416 ISNFGISNFTFLLVGLSLNTSSRRPFSPCFVQHRRYTRPV 535
           I++FG++       G++  T + R  +P  +QHR YT+ V
Sbjct: 273 IADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKV 312


>At4g31170.1 68417.m04424 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 412

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 416 ISNFGISNFTFLLVGLSLNTSSRRPFSPCFVQHRRYTRPV 535
           I++FG++       G++  T + R  +P  +QHR YT+ V
Sbjct: 273 IADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKV 312


>At1g02205.2 68414.m00154 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 625

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 233 YHIHRIPDLAHPLVFKVDHPFAYFILYEDKIIFGWYLYPLI*DFTDRIINFK-TIIYIFF 57
           YH H    +    +  V HPFA  I Y   I+F   L   +   T  II+F   IIYI F
Sbjct: 158 YHSHHHSSIVTEPITSVIHPFAEHIAY--FILFAIPLLTTLLTKTASIISFAGYIIYIDF 215

Query: 56  IND 48
           +N+
Sbjct: 216 MNN 218


>At1g02205.1 68414.m00153 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 580

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 233 YHIHRIPDLAHPLVFKVDHPFAYFILYEDKIIFGWYLYPLI*DFTDRIINFK-TIIYIFF 57
           YH H    +    +  V HPFA  I Y   I+F   L   +   T  II+F   IIYI F
Sbjct: 158 YHSHHHSSIVTEPITSVIHPFAEHIAY--FILFAIPLLTTLLTKTASIISFAGYIIYIDF 215

Query: 56  IND 48
           +N+
Sbjct: 216 MNN 218


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 486 LLEDVFRLRPTNRKVKLEMPKFEIKSKLDLKPLRPKFGV-SKIFNEPAPNIVKGDSVVVS 310
           L ED  R      K  +++ +  +  KL  K LR +  + S I +E  P +V GDS    
Sbjct: 560 LPEDHRRYSVYINKEDVKLKRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAKF 619

Query: 309 EAFQEAF 289
           E F++AF
Sbjct: 620 ERFRDAF 626


>At2g24360.1 68415.m02911 serine/threonine/tyrosine kinase, putative
           similar to serine/threonine/tyrosine kinase [Arachis
           hypogaea] gi|13124865|gb|AAK11734
          Length = 411

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 416 ISNFGISNFTFLLVGLSLNTSSRRPFSPCFVQHRRYTRPV 535
           I++FG++       G++  T + R  +P  +QHR Y + V
Sbjct: 272 IADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRAYNQKV 311


>At3g43320.1 68416.m04579 hypothetical protein
          Length = 510

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = -1

Query: 534 TGRVYRRCWTKQGEK-GLLEDVFRLRPTNRKVKLEMPKFEIKSKLDLKPLRPKFGVSKIF 358
           T  V ++ W +  +K    +  F +   + + K+ +PK   +  L  KPL   F V  I 
Sbjct: 78  TSHVTKKSWLQAAQKRSFTKQKFEVVEVDGQEKVVVPK---EVFLGAKPLWEDFLVGNIL 134

Query: 357 NEPAPNIVKGDSVV 316
           N  AP++ K   +V
Sbjct: 135 NSKAPHVGKIHMIV 148


>At1g42740.1 68414.m04939 hypothetical protein
          Length = 359

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = -1

Query: 486 LLEDVFRLRPTNRKVKLEMPKFEIKSKLDLKPLRPKFGVSKIFNE-PAPNIVKGDSVV 316
           +L++   +     K K+  PK   KSK +L   R K  + K+  E P  ++VK  S+V
Sbjct: 133 ILQNPISVAENVTKPKVSFPKSPRKSKQELDDARCKAMMDKLIVEMPLIDVVKSSSIV 190


>At3g19490.1 68416.m02470 sodium hydrogen antiporter, putative
           similar to NhaD [Vibrio parahaemolyticus]
           gi|3123728|dbj|BAA25994; Na+/H+ aniporter (NhaD) family
           member, PMID:11500563
          Length = 576

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 73  IVLKLMILSVKSYINGYKYQPKIILSSYKM 162
           + + L ++S+ S +NG +  PK +L+S KM
Sbjct: 327 LAVPLALMSLTSEVNGKEQDPKDVLASEKM 356


>At3g16540.1 68416.m02112 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 555

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 420 EIKSKLDLKPLRPKFGVSKIFNEPAPNIVKG 328
           E +  + LKP++P F V + +N P+  I  G
Sbjct: 396 EYEYNISLKPVKPNFTVQQFYNVPSYYIFGG 426


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,175
Number of Sequences: 28952
Number of extensions: 290265
Number of successful extensions: 818
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)