Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J21
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 188 3e-48
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 182 3e-46
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 109 2e-24
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 27 9.1
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 27 9.1
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 188 bits (458), Expect = 3e-48
Identities = 89/178 (50%), Positives = 125/178 (70%)
Frame = +1
Query: 88 KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKERDE 267
K VPESV + L + +++ RK IF RA+ +++Y +E++
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQY-AQEYDAQEKEL 65
Query: 268 IRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKA 447
++L R+AR +G +YV EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKA
Sbjct: 66 VQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKA 125
Query: 448 TVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 621
T+NMLR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC
Sbjct: 126 TINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIIC 183
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 182 bits (442), Expect = 3e-46
Identities = 89/180 (49%), Positives = 124/180 (68%), Gaps = 6/180 (3%)
Frame = +1
Query: 100 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKERDEIRLA 279
VPESV + + + SI+ RK IF RA+ +++Y +E++ ++L
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQY-AEEYEAQEKELVQLK 68
Query: 280 RQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNM 459
R+AR +G +YV E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NM
Sbjct: 69 REARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINM 128
Query: 460 LRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKR------LSKQNIIC 621
LR EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+T+N +IE+ L K +IIC
Sbjct: 129 LRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIIC 188
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 109 bits (262), Expect = 2e-24
Identities = 64/186 (34%), Positives = 101/186 (54%), Gaps = 3/186 (1%)
Frame = +1
Query: 73 KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRI 252
+E +++LP V E+V + +R K KR E +++R
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFV-REFRN 61
Query: 253 KERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNG 423
KE D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ G
Sbjct: 62 KELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTG 119
Query: 424 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLS 603
VF++ AT+ L + EP+I +G+PNLK+V++L+YK+G L+ + P+TSN LIEK L
Sbjct: 120 VFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALG 179
Query: 604 KQNIIC 621
+ IIC
Sbjct: 180 EYGIIC 185
>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +3
Query: 75 RGQ*EVASCSGISLEAP*KEGGTPSSPSSDHTQEAFRFH*EEERNL*ESRTNM 233
R + E CS +S++AP E P + S+ + +E H E+ + + + M
Sbjct: 1303 RNENEAGPCSSMSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNSCHDRESRM 1355
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 602 LSLFSMSELEVIGTRFPFSLAKPRLYTNSRTLFKLG*PHAI 480
L L S+ LE + RFP L K + L KL PH I
Sbjct: 310 LKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVI 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,443,619
Number of Sequences: 37544
Number of extensions: 329067
Number of successful extensions: 825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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