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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J21
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...   188   3e-48
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...   182   3e-46
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...   109   2e-24
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    27   9.1  
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155...    27   9.1  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score =  188 bits (458), Expect = 3e-48
 Identities = 89/178 (50%), Positives = 125/178 (70%)
 Frame = +1

Query: 88  KLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKERDE 267
           K   VPESV               +  L  +  +++ RK IF RA+   +++Y  +E++ 
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQY-AQEYDAQEKEL 65

Query: 268 IRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKA 447
           ++L R+AR +G +YV  EAKL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKA
Sbjct: 66  VQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKA 125

Query: 448 TVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 621
           T+NMLR  EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+ +N +IE+ L K +IIC
Sbjct: 126 TINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIIC 183


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score =  182 bits (442), Expect = 3e-46
 Identities = 89/180 (49%), Positives = 124/180 (68%), Gaps = 6/180 (3%)
 Frame = +1

Query: 100 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKERDEIRLA 279
           VPESV               +  +  +  SI+ RK IF RA+   +++Y  +E++ ++L 
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQY-AEEYEAQEKELVQLK 68

Query: 280 RQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNM 459
           R+AR +G +YV  E KL FV+RIRG+N + PK RK+LQL RLRQI NGVF+++NKAT+NM
Sbjct: 69  REARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINM 128

Query: 460 LRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKR------LSKQNIIC 621
           LR  EPY+A+GYPNLKSVREL+YKRG+ KLN +R+P+T+N +IE+       L K +IIC
Sbjct: 129 LRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIIC 188


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score =  109 bits (262), Expect = 2e-24
 Identities = 64/186 (34%), Positives = 101/186 (54%), Gaps = 3/186 (1%)
 Frame = +1

Query: 73  KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRI 252
           +E +++LP V E+V               +    +R       K   KR E    +++R 
Sbjct: 3   EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFV-REFRN 61

Query: 253 KERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNG 423
           KE D +R+  + + R     P E   +KL F IRI G   + P +R++L+  RL Q+  G
Sbjct: 62  KELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTG 119

Query: 424 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLS 603
           VF++   AT+  L + EP+I +G+PNLK+V++L+YK+G   L+ +  P+TSN LIEK L 
Sbjct: 120 VFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALG 179

Query: 604 KQNIIC 621
           +  IIC
Sbjct: 180 EYGIIC 185


>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
            14479958-14480024,14480632-14480831,14480915-14481068,
            14481585-14481669,14481766-14481857,14482575-14482766,
            14482867-14482992,14483072-14483125,14483494-14483550,
            14484509-14484606,14484703-14485038,14485116-14485203,
            14486891-14487016,14487082-14487138,14488054-14488133,
            14488228-14488270,14488948-14489034,14489331-14489420,
            14489996-14490054,14490141-14490231,14490330-14490495,
            14490662-14490755,14491787-14492909
          Length = 1537

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 75   RGQ*EVASCSGISLEAP*KEGGTPSSPSSDHTQEAFRFH*EEERNL*ESRTNM 233
            R + E   CS +S++AP  E   P + S+ + +E    H  E+ +  +  + M
Sbjct: 1303 RNENEAGPCSSMSVDAPMTEAPEPVNVSNHNIEEQNSCHDREQNSCHDRESRM 1355


>03_05_1068 +
           30114682-30114868,30114947-30115239,30115354-30115591,
           30115977-30117871
          Length = 870

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -2

Query: 602 LSLFSMSELEVIGTRFPFSLAKPRLYTNSRTLFKLG*PHAI 480
           L L S+  LE +  RFP  L K  +      L KL  PH I
Sbjct: 310 LKLPSIPALEELRKRFPLQLVKDLIPAGGDYLLKLPMPHVI 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,443,619
Number of Sequences: 37544
Number of extensions: 329067
Number of successful extensions: 825
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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