Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J21
(621 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 220 8e-58
SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5) 30 1.7
SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 5.3
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_37536| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_27925| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.3
SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10) 27 9.3
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 220 bits (537), Expect = 8e-58
Identities = 107/182 (58%), Positives = 133/182 (73%)
Frame = +1
Query: 76 EDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIK 255
+D K+P VPE++ + L ++ KRKEIFKRAE K+YR K
Sbjct: 3 QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYV-KEYRQK 61
Query: 256 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVR 435
E DE+R+ + A+ GN+YVP EA+LAFVIRIRG+N VSPKVRK+LQL RLRQINNGVFVR
Sbjct: 62 EVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLLRLRQINNGVFVR 121
Query: 436 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNI 615
LNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K++ +RV +T NS++EK L K I
Sbjct: 122 LNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGI 181
Query: 616 IC 621
IC
Sbjct: 182 IC 183
>SB_34276| Best HMM Match : CsbD (HMM E-Value=1.5)
Length = 119
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -1
Query: 612 VLFAKSLLDE*VGGDRDTLPVQFGETAFVHQLSDTLQ 502
VL A +LLDE +G DRD P Q G+ A D Q
Sbjct: 3 VLSAAALLDELMGSDRDLAPDQKGKRAHWSDSEDGAQ 39
>SB_16211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -1
Query: 612 VLFAKSLLDE*VGGDRDTLPVQFGETA 532
VL A +LLDE +G DRD P Q G+ A
Sbjct: 3 VLSAAALLDELMGSDRDLAPDQKGKRA 29
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 562 HASRSVWRNRVCTPTLGHSSSWGSPMQYRAQRYEACSLWPC*DERTRRC 416
HA V R P +S + +P Q ++RY A S PC ER C
Sbjct: 586 HAPSQVNSERYNAPNQVNSERYNAPSQVNSERYNAPSQSPC-TERYTPC 633
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 565 GHASRSVWRNRVCTPTLGHSSSWGSPMQYRAQRYEACS 452
GH S++V R P+ +S + +P Q ++RY A S
Sbjct: 574 GHTSKNVNSERYHAPSQVNSERYNAPNQVNSERYNAPS 611
>SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 590
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 335 LSSVFVVSTKYHPRYARYCSCSGCVRS 415
L S+FV +T RY YC+C G + S
Sbjct: 286 LGSIFVWATGNGGRYNDYCNCDGYITS 312
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 235 SKDYRI--KERDEIRLARQARNRGNYYVP 315
S+ YR K RD +AR+ R+RG YY+P
Sbjct: 475 SEKYRSSGKIRDTSSIARETRSRGPYYLP 503
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 271 RLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRK 384
RL R + R NYY+ + +AF + I V + P R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923
>SB_37536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 228 WFGSLKDFFPLLNGSGTPLECDLKTAS 148
W+G ++ FP + SG PLE + AS
Sbjct: 30 WYGFIQLRFPTIKASGDPLESTCRHAS 56
>SB_27925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 214 KRAEPICSKDYRIKERDEIRLARQARNRGNYYVPGEAK 327
+R EP+ + +K +EI NRGN V E K
Sbjct: 31 RRGEPVNGSNNHVKATEEIVARNDHVNRGNAQVTSEGK 68
>SB_48789| Best HMM Match : M (HMM E-Value=1.3e-10)
Length = 2478
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 464 VSLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRSPPTHSSRRDLA 604
VS+SP + G TPT S + + P +G +S S + R LA
Sbjct: 1951 VSVSPAIRGLTPTISSSSQFASQQEEPATSGRLSASDRSGRLRSHLA 1997
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,976,346
Number of Sequences: 59808
Number of extensions: 379116
Number of successful extensions: 1045
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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