Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J21
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   198   3e-51
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z68222-1|CAA92497.1|  145|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  198 bits (482), Expect = 3e-51
 Identities = 91/180 (50%), Positives = 130/180 (72%)
 Frame = +1

Query: 82  SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKER 261
           +KK+P VPE+V               Q  +   + + +K+ + FKRAE    ++YR  ++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYV-QEYRNAQK 62

Query: 262 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 441
           + +RL R+A  +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LN
Sbjct: 63  EGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLN 122

Query: 442 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 621
           KAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK++G RVPIT N+++E+ L K NIIC
Sbjct: 123 KATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIIC 182


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/68 (22%), Positives = 32/68 (47%)
 Frame = +1

Query: 172 KRRSASIKKRKEIFKRAEPICSKDYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 351
           ++   S +  +++ K    +  +DY I +   IR  R+AR    +YV  +   A+   + 
Sbjct: 165 EKHQISAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDRFYVRQDGTRAYYFDLN 224

Query: 352 GVNQVSPK 375
            +++V  K
Sbjct: 225 ELSEVFEK 232


>Z68222-1|CAA92497.1|  145|Caenorhabditis elegans Hypothetical
           protein ZK1251.1 protein.
          Length = 145

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 155 VFRSHSRGVPLPLRRGKKSLREPNQYVQRITASRSVMKSDWQDRLVTVAIIMCPVKLN 328
           + RS   G+  P+ R  + LRE  +  QRI+A  SV  +   + L T  + M  +  N
Sbjct: 28  ISRSTRSGLTFPVGRIHRKLRETTRGKQRISAGASVFMAATLEYLTTELMEMSAIAAN 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,126
Number of Sequences: 27780
Number of extensions: 278994
Number of successful extensions: 787
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)