BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_J21 (621 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 198 3e-51 Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 30 1.5 Z68222-1|CAA92497.1| 145|Caenorhabditis elegans Hypothetical pr... 29 2.0 >AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal protein, large subunitprotein 7 protein. Length = 244 Score = 198 bits (482), Expect = 3e-51 Identities = 91/180 (50%), Positives = 130/180 (72%) Frame = +1 Query: 82 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKER 261 +KK+P VPE+V Q + + + +K+ + FKRAE ++YR ++ Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYV-QEYRNAQK 62 Query: 262 DEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLN 441 + +RL R+A +G++YVP E K+AFV+RIRG+NQ+ PK RK LQ+ RLRQINNGVFV+LN Sbjct: 63 EGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLN 122 Query: 442 KATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 621 KAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK++G RVPIT N+++E+ L K NIIC Sbjct: 123 KATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIIC 182 >Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical protein ZK1058.5 protein. Length = 269 Score = 29.9 bits (64), Expect = 1.5 Identities = 15/68 (22%), Positives = 32/68 (47%) Frame = +1 Query: 172 KRRSASIKKRKEIFKRAEPICSKDYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 351 ++ S + +++ K + +DY I + IR R+AR +YV + A+ + Sbjct: 165 EKHQISAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDRFYVRQDGTRAYYFDLN 224 Query: 352 GVNQVSPK 375 +++V K Sbjct: 225 ELSEVFEK 232 >Z68222-1|CAA92497.1| 145|Caenorhabditis elegans Hypothetical protein ZK1251.1 protein. Length = 145 Score = 29.5 bits (63), Expect = 2.0 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = +2 Query: 155 VFRSHSRGVPLPLRRGKKSLREPNQYVQRITASRSVMKSDWQDRLVTVAIIMCPVKLN 328 + RS G+ P+ R + LRE + QRI+A SV + + L T + M + N Sbjct: 28 ISRSTRSGLTFPVGRIHRKLRETTRGKQRISAGASVFMAATLEYLTTELMEMSAIAAN 85 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,778,126 Number of Sequences: 27780 Number of extensions: 278994 Number of successful extensions: 787 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 751 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 786 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1353389824 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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