Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J21
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 187 5e-48
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 187 5e-48
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 186 8e-48
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 186 8e-48
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 186 8e-48
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 184 4e-47
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 106 1e-23
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 1.9
At4g32010.1 68417.m04557 transcriptional factor B3 family protei... 28 5.7
At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate mu... 27 7.6
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 187 bits (456), Expect = 5e-48
Identities = 89/174 (51%), Positives = 121/174 (69%)
Frame = +1
Query: 100 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKERDEIRLA 279
VPESV + + S++ RK IFKRAE +K+Y K+ + IRL
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQY-AKEYAEKDNELIRLK 71
Query: 280 RQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNM 459
R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNM
Sbjct: 72 REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNM 131
Query: 460 LRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 621
LR EPY+ +GYPNLKSV+EL+YKRG+ KLN +R+ +T NS++++ L K IIC
Sbjct: 132 LRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIIC 185
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 187 bits (456), Expect = 5e-48
Identities = 89/174 (51%), Positives = 121/174 (69%)
Frame = +1
Query: 100 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKERDEIRLA 279
VPESV + + S++ RK IFKRAE +K+Y K+ + IRL
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQY-AKEYAEKDNELIRLK 66
Query: 280 RQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNM 459
R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKATVNM
Sbjct: 67 REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATVNM 126
Query: 460 LRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 621
LR EPY+ +GYPNLKSV+EL+YKRG+ KLN +R+ +T NS++++ L K IIC
Sbjct: 127 LRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIIC 180
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 186 bits (454), Expect = 8e-48
Identities = 90/181 (49%), Positives = 124/181 (68%)
Frame = +1
Query: 79 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKE 258
+++ VPESV Q + + +KRK IF RA+ SK+Y+ KE
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQY-SKEYQEKE 61
Query: 259 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 438
R+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++
Sbjct: 62 RELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKV 121
Query: 439 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 618
NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K II
Sbjct: 122 NKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGII 181
Query: 619 C 621
C
Sbjct: 182 C 182
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 186 bits (454), Expect = 8e-48
Identities = 90/181 (49%), Positives = 124/181 (68%)
Frame = +1
Query: 79 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKE 258
+++ VPESV Q + + +KRK IF RA+ SK+Y+ KE
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQY-SKEYQEKE 61
Query: 259 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 438
R+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++
Sbjct: 62 RELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKV 121
Query: 439 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 618
NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K II
Sbjct: 122 NKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGII 181
Query: 619 C 621
C
Sbjct: 182 C 182
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 186 bits (454), Expect = 8e-48
Identities = 90/181 (49%), Positives = 124/181 (68%)
Frame = +1
Query: 79 DSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKE 258
+++ VPESV Q + + +KRK IF RA+ SK+Y+ KE
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQY-SKEYQEKE 61
Query: 259 RDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRL 438
R+ I+L R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++
Sbjct: 62 RELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKV 121
Query: 439 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 618
NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KLN +R +T NS++++ L K II
Sbjct: 122 NKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGII 181
Query: 619 C 621
C
Sbjct: 182 C 182
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 184 bits (448), Expect = 4e-47
Identities = 89/174 (51%), Positives = 120/174 (68%)
Frame = +1
Query: 100 VPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRIKERDEIRLA 279
VPESV Q + + + RK IFKRAE SK+Y KE++ I L
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQY-SKEYAEKEKELISLK 66
Query: 280 RQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNM 459
R+A+ +G +YV EAKL F+IRIRG+N + PK +K+LQL RLRQI NGVF+++NKAT+NM
Sbjct: 67 REAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNM 126
Query: 460 LRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIIC 621
LR EPY+ +G+PNLKSV+EL+YKRG+ KLN +R+ +T NS++E+ L K IIC
Sbjct: 127 LRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIIC 180
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 106 bits (255), Expect = 1e-23
Identities = 56/182 (30%), Positives = 96/182 (52%)
Frame = +1
Query: 73 KEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRKEIFKRAEPICSKDYRI 252
+E++K L +PE V + S KK+ KR E ++R
Sbjct: 3 EEEAKGLDYIPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVH-EFRA 61
Query: 253 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFV 432
KE D IR+ ++ + + P ++ L F+IRI+G N + PK +++L +L+ + GVF
Sbjct: 62 KEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFA 121
Query: 433 RLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQN 612
+ + L +PY+ +GYPN KSV++L+YK+G + G VP+T N++IE+ L +
Sbjct: 122 KATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHK 181
Query: 613 II 618
I+
Sbjct: 182 IL 183
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 371 GDTWLTPRIRMTNASLASPGT 309
G TW+ P I +N S+ SPGT
Sbjct: 138 GGTWIQPEIEESNKSMFSPGT 158
>At4g32010.1 68417.m04557 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518, VIVIPAROUS1 protein [Triticum aestivum]
GI:7801376; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 780
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/85 (22%), Positives = 35/85 (41%)
Frame = +2
Query: 212 LREPNQYVQRITASRSVMKSDWQDRLVTVAIIMCPVKLN*HLSSVFVVSTKYHPRYARYC 391
+R+ ++ +R AS + + QD ++ + + V +T HPR+ C
Sbjct: 572 VRQSKEFKRRRLASSNEKLNQSQDASALNSLGNAGITTTGEQGEITVAATTKHPRHRAGC 631
Query: 392 SCSGCVRSTTACSFVSTRPQ*TCFV 466
SC C + + +P TC V
Sbjct: 632 SCIVCSQPPSGKG--KHKPSCTCTV 654
>At3g26780.1 68416.m03350 phosphoglycerate/bisphosphoglycerate
mutase family protein similar to X4 protein GI:21386798,
Y4 protein GI:21386800 from [Silene dioica]; contains
Pfam profiles PF00300: phosphoglycerate mutase family,
PF01535: PPR repeat
Length = 1053
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 126 TVLQD*FRNSWQLLTVLFTLHRFFLGRSLLFCS 28
TVLQ +RN WQ+ + T H L + LFCS
Sbjct: 375 TVLQHSWRNGWQIKRMNDTAH-LRLFKKALFCS 406
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,059,399
Number of Sequences: 28952
Number of extensions: 258787
Number of successful extensions: 643
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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