BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_J20 (383 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 2.2 09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 27 3.8 02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467 27 5.1 06_01_1013 - 7931756-7935109 26 8.9 03_02_0989 - 13006783-13007076,13007311-13007559,13010214-130103... 26 8.9 02_02_0248 - 8267332-8268276,8268338-8269288 26 8.9 >04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 Length = 520 Score = 28.3 bits (60), Expect = 2.2 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -1 Query: 158 YIILSTRGSSPRRPAADMGTNRRDISTYIPHLNFQGPQRVSG 33 + +L+ RG P +PAA RRD ++P + Q P G Sbjct: 28 HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69 >09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982, 11952016-11952314,11953743-11956795 Length = 1273 Score = 27.5 bits (58), Expect = 3.8 Identities = 11/31 (35%), Positives = 19/31 (61%) Frame = -2 Query: 346 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEH 254 N++G + RG+V + V++ V YE + EH Sbjct: 212 NVVGALRARGHVTILAAVVSNVTYECLSPEH 242 >02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467 Length = 734 Score = 27.1 bits (57), Expect = 5.1 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%) Frame = -2 Query: 313 VEFVRKVLAFVVYEDILKEHI--RLFEARRVRWTVLRANPYSEVTDPICRLP 164 V+ +R+ L ED L+ R F RR +WT+ R Y E+ + +LP Sbjct: 352 VDLIREDLRSGWVEDDLRSAAAYRRFNDRRGQWTLRREQCYGEMGWSVAKLP 403 >06_01_1013 - 7931756-7935109 Length = 1117 Score = 26.2 bits (55), Expect = 8.9 Identities = 9/27 (33%), Positives = 16/27 (59%) Frame = -3 Query: 105 GYEPARHLHVHPSPEFSRSAESIRTPP 25 G+EP R + +HP+P+ A + + P Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSKP 905 >03_02_0989 - 13006783-13007076,13007311-13007559,13010214-13010349, 13010777-13010995,13013796-13014174,13014365-13014496, 13015625-13015667 Length = 483 Score = 26.2 bits (55), Expect = 8.9 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -2 Query: 214 LRANPYSEVTDPICRLPLPTLFYRLEALH 128 L+++P S+ R+PLP R+EAL+ Sbjct: 118 LKSSPLSQQVTRALRIPLPRTLKRIEALN 146 >02_02_0248 - 8267332-8268276,8268338-8269288 Length = 631 Score = 26.2 bits (55), Expect = 8.9 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = -2 Query: 313 VEFVRKVLAFVVYEDILKEHI-RLFEARRVRWTVLRANPYSEVTDPICRLP 164 +EF+ K L +D+ R F RR +WT+ R Y E+ + LP Sbjct: 390 IEFIGKDLKSRWVDDLTNAAAYRRFNDRRGQWTLRRERCYQELGWSVTELP 440 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,783,454 Number of Sequences: 37544 Number of extensions: 221433 Number of successful extensions: 682 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 663 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 682 length of database: 14,793,348 effective HSP length: 74 effective length of database: 12,015,092 effective search space used: 636799876 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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