Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J20
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     28   2.2  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    27   3.8  
02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467           27   5.1  
06_01_1013 - 7931756-7935109                                           26   8.9  
03_02_0989 - 13006783-13007076,13007311-13007559,13010214-130103...    26   8.9  
02_02_0248 - 8267332-8268276,8268338-8269288                           26   8.9  

>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 158 YIILSTRGSSPRRPAADMGTNRRDISTYIPHLNFQGPQRVSG 33
           + +L+ RG  P +PAA     RRD   ++P  + Q P    G
Sbjct: 28  HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69


>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 346 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEH 254
           N++G  + RG+V  +  V++ V YE +  EH
Sbjct: 212 NVVGALRARGHVTILAAVVSNVTYECLSPEH 242


>02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467
          Length = 734

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 313 VEFVRKVLAFVVYEDILKEHI--RLFEARRVRWTVLRANPYSEVTDPICRLP 164
           V+ +R+ L     ED L+     R F  RR +WT+ R   Y E+   + +LP
Sbjct: 352 VDLIREDLRSGWVEDDLRSAAAYRRFNDRRGQWTLRREQCYGEMGWSVAKLP 403


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 105 GYEPARHLHVHPSPEFSRSAESIRTPP 25
           G+EP R + +HP+P+    A  + + P
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSKP 905


>03_02_0989 -
           13006783-13007076,13007311-13007559,13010214-13010349,
           13010777-13010995,13013796-13014174,13014365-13014496,
           13015625-13015667
          Length = 483

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 214 LRANPYSEVTDPICRLPLPTLFYRLEALH 128
           L+++P S+      R+PLP    R+EAL+
Sbjct: 118 LKSSPLSQQVTRALRIPLPRTLKRIEALN 146


>02_02_0248 - 8267332-8268276,8268338-8269288
          Length = 631

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = -2

Query: 313 VEFVRKVLAFVVYEDILKEHI-RLFEARRVRWTVLRANPYSEVTDPICRLP 164
           +EF+ K L     +D+      R F  RR +WT+ R   Y E+   +  LP
Sbjct: 390 IEFIGKDLKSRWVDDLTNAAAYRRFNDRRGQWTLRRERCYQELGWSVTELP 440


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,783,454
Number of Sequences: 37544
Number of extensions: 221433
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)