BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_J20 (383 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006641-4|AAF39819.2| 477|Caenorhabditis elegans Hypothetical ... 29 0.85 Z46996-7|CAE17681.1| 152|Caenorhabditis elegans Hypothetical pr... 27 3.4 Z49907-5|CAA90087.1| 327|Caenorhabditis elegans Hypothetical pr... 27 4.5 U58752-5|AAO38681.1| 507|Caenorhabditis elegans Hypothetical pr... 27 4.5 U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical pr... 27 4.5 AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine r... 27 4.5 AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 27 6.0 AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 27 6.0 AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 27 6.0 Z74042-4|CAA98533.1| 265|Caenorhabditis elegans Hypothetical pr... 26 7.9 Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical pr... 26 7.9 AJ561211-1|CAD99213.1| 82|Caenorhabditis elegans NAS-21 protei... 26 7.9 AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein. 26 7.9 AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 26 7.9 AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 26 7.9 >AC006641-4|AAF39819.2| 477|Caenorhabditis elegans Hypothetical protein F45D11.6 protein. Length = 477 Score = 29.5 bits (63), Expect = 0.85 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +2 Query: 170 SANWIRNFGIRIGSEDRPADSTCFKEPNMFFKDVFVY 280 S W++ F R R A +TC KEP+ F K + Y Sbjct: 124 STGWLQKFMRRHHLSTRRATTTCQKEPDEFAKKIVDY 160 >Z46996-7|CAE17681.1| 152|Caenorhabditis elegans Hypothetical protein C34C12.9 protein. Length = 152 Score = 27.5 bits (58), Expect = 3.4 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +3 Query: 234 RASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLNNKRC 365 R+S SLR T ST T S+ P + + P MF N+++C Sbjct: 77 RSSTGFYSSLRNLFSTGNPSTTTTISSIPESHINP-MFANHEKC 119 >Z49907-5|CAA90087.1| 327|Caenorhabditis elegans Hypothetical protein B0491.5 protein. Length = 327 Score = 27.1 bits (57), Expect = 4.5 Identities = 14/43 (32%), Positives = 21/43 (48%) Frame = -3 Query: 279 YTKTSLKNILGSLKHVESAGRSSEPILIPKLRIQFADFPYLHY 151 Y + S + G H +SAG P+L K+++ AD P Y Sbjct: 285 YQRHSETGLQGMTAHPQSAGIWGGPLLWQKMQLGNADVPTTRY 327 >U58752-5|AAO38681.1| 507|Caenorhabditis elegans Hypothetical protein B0218.1b protein. Length = 507 Score = 27.1 bits (57), Expect = 4.5 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = -3 Query: 282 WYTKTSL--KNILGSLKHVESAGRSSEPILIPKL 187 W+T T + +L S KH+E+AG + P P+L Sbjct: 269 WFTPTPALQRAVLESKKHLEAAGHTVIPFYPPRL 302 >U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical protein B0218.1a protein. Length = 572 Score = 27.1 bits (57), Expect = 4.5 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = -3 Query: 282 WYTKTSL--KNILGSLKHVESAGRSSEPILIPKL 187 W+T T + +L S KH+E+AG + P P+L Sbjct: 334 WFTPTPALQRAVLESKKHLEAAGHTVIPFYPPRL 367 >AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine receptor, class w protein108 protein. Length = 196 Score = 27.1 bits (57), Expect = 4.5 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +3 Query: 204 LALRTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTF 317 L L + + ++A K SLR + +TTK F+T + F Sbjct: 65 LLLHALNKAKKARKKKKSSLRDTDHTTKLVVFMTAAFF 102 >AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor NHR-8 protein. Length = 560 Score = 26.6 bits (56), Expect = 6.0 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = +2 Query: 35 RILSADLENSGEGCTWRCRAGSYPYPQQVS 124 ++++ E S + CT +C+ G YP Q+++ Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178 >AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone receptor familyprotein 8, isoform b protein. Length = 559 Score = 26.6 bits (56), Expect = 6.0 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = +2 Query: 35 RILSADLENSGEGCTWRCRAGSYPYPQQVS 124 ++++ E S + CT +C+ G YP Q+++ Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178 >AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone receptor familyprotein 8, isoform a protein. Length = 560 Score = 26.6 bits (56), Expect = 6.0 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = +2 Query: 35 RILSADLENSGEGCTWRCRAGSYPYPQQVS 124 ++++ E S + CT +C+ G YP Q+++ Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178 >Z74042-4|CAA98533.1| 265|Caenorhabditis elegans Hypothetical protein T11F9.5 protein. Length = 265 Score = 26.2 bits (55), Expect = 7.9 Identities = 8/25 (32%), Positives = 17/25 (68%) Frame = -1 Query: 218 GPQSQSLFRSYGSNLPTSLTYIILS 144 GP++ FR+ GS +P+ Y++++ Sbjct: 204 GPKNSKYFRTMGSQIPSYFDYLMIN 228 >Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical protein F54F7.5 protein. Length = 966 Score = 26.2 bits (55), Expect = 7.9 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%) Frame = +2 Query: 302 YKFNVPPY--FSKTNDVPKQ*EML 367 ++FNVPPY F + +D+P E++ Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472 >AJ561211-1|CAD99213.1| 82|Caenorhabditis elegans NAS-21 protein protein. Length = 82 Score = 26.2 bits (55), Expect = 7.9 Identities = 8/25 (32%), Positives = 17/25 (68%) Frame = -1 Query: 218 GPQSQSLFRSYGSNLPTSLTYIILS 144 GP++ FR+ GS +P+ Y++++ Sbjct: 48 GPKNSKYFRTMGSQIPSYFDYLMIN 72 >AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein. Length = 966 Score = 26.2 bits (55), Expect = 7.9 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%) Frame = +2 Query: 302 YKFNVPPY--FSKTNDVPKQ*EML 367 ++FNVPPY F + +D+P E++ Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472 >AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical protein C31B8.1 protein. Length = 229 Score = 26.2 bits (55), Expect = 7.9 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = -1 Query: 248 AL*STSSPLDG-PQSQSLFRSYGSNLPTSLTYIILSTRGSSPRRPA 114 A+ + SP P +Q LF S+G LP I + SSP + A Sbjct: 13 AITRSKSPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSPSKIA 58 >AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related family protein 4 protein. Length = 960 Score = 26.2 bits (55), Expect = 7.9 Identities = 8/19 (42%), Positives = 14/19 (73%) Frame = +2 Query: 20 ICGGVRILSADLENSGEGC 76 +CGG+ +L +DL++ GC Sbjct: 825 VCGGLALLGSDLDSVSMGC 843 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,984,802 Number of Sequences: 27780 Number of extensions: 183257 Number of successful extensions: 528 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 522 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 528 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 566277334 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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