Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J20
(383 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006641-4|AAF39819.2| 477|Caenorhabditis elegans Hypothetical ... 29 0.85
Z46996-7|CAE17681.1| 152|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z49907-5|CAA90087.1| 327|Caenorhabditis elegans Hypothetical pr... 27 4.5
U58752-5|AAO38681.1| 507|Caenorhabditis elegans Hypothetical pr... 27 4.5
U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical pr... 27 4.5
AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine r... 27 4.5
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 27 6.0
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 27 6.0
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 27 6.0
Z74042-4|CAA98533.1| 265|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical pr... 26 7.9
AJ561211-1|CAD99213.1| 82|Caenorhabditis elegans NAS-21 protei... 26 7.9
AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein. 26 7.9
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 26 7.9
AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched relat... 26 7.9
>AC006641-4|AAF39819.2| 477|Caenorhabditis elegans Hypothetical
protein F45D11.6 protein.
Length = 477
Score = 29.5 bits (63), Expect = 0.85
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 170 SANWIRNFGIRIGSEDRPADSTCFKEPNMFFKDVFVY 280
S W++ F R R A +TC KEP+ F K + Y
Sbjct: 124 STGWLQKFMRRHHLSTRRATTTCQKEPDEFAKKIVDY 160
>Z46996-7|CAE17681.1| 152|Caenorhabditis elegans Hypothetical
protein C34C12.9 protein.
Length = 152
Score = 27.5 bits (58), Expect = 3.4
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 234 RASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLNNKRC 365
R+S SLR T ST T S+ P + + P MF N+++C
Sbjct: 77 RSSTGFYSSLRNLFSTGNPSTTTTISSIPESHINP-MFANHEKC 119
>Z49907-5|CAA90087.1| 327|Caenorhabditis elegans Hypothetical
protein B0491.5 protein.
Length = 327
Score = 27.1 bits (57), Expect = 4.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -3
Query: 279 YTKTSLKNILGSLKHVESAGRSSEPILIPKLRIQFADFPYLHY 151
Y + S + G H +SAG P+L K+++ AD P Y
Sbjct: 285 YQRHSETGLQGMTAHPQSAGIWGGPLLWQKMQLGNADVPTTRY 327
>U58752-5|AAO38681.1| 507|Caenorhabditis elegans Hypothetical
protein B0218.1b protein.
Length = 507
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 282 WYTKTSL--KNILGSLKHVESAGRSSEPILIPKL 187
W+T T + +L S KH+E+AG + P P+L
Sbjct: 269 WFTPTPALQRAVLESKKHLEAAGHTVIPFYPPRL 302
>U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical
protein B0218.1a protein.
Length = 572
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -3
Query: 282 WYTKTSL--KNILGSLKHVESAGRSSEPILIPKL 187
W+T T + +L S KH+E+AG + P P+L
Sbjct: 334 WFTPTPALQRAVLESKKHLEAAGHTVIPFYPPRL 367
>AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine
receptor, class w protein108 protein.
Length = 196
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 204 LALRTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTF 317
L L + + ++A K SLR + +TTK F+T + F
Sbjct: 65 LLLHALNKAKKARKKKKSSLRDTDHTTKLVVFMTAAFF 102
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 35 RILSADLENSGEGCTWRCRAGSYPYPQQVS 124
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 35 RILSADLENSGEGCTWRCRAGSYPYPQQVS 124
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 26.6 bits (56), Expect = 6.0
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +2
Query: 35 RILSADLENSGEGCTWRCRAGSYPYPQQVS 124
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>Z74042-4|CAA98533.1| 265|Caenorhabditis elegans Hypothetical
protein T11F9.5 protein.
Length = 265
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -1
Query: 218 GPQSQSLFRSYGSNLPTSLTYIILS 144
GP++ FR+ GS +P+ Y++++
Sbjct: 204 GPKNSKYFRTMGSQIPSYFDYLMIN 228
>Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical
protein F54F7.5 protein.
Length = 966
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +2
Query: 302 YKFNVPPY--FSKTNDVPKQ*EML 367
++FNVPPY F + +D+P E++
Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472
>AJ561211-1|CAD99213.1| 82|Caenorhabditis elegans NAS-21 protein
protein.
Length = 82
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -1
Query: 218 GPQSQSLFRSYGSNLPTSLTYIILS 144
GP++ FR+ GS +P+ Y++++
Sbjct: 48 GPKNSKYFRTMGSQIPSYFDYLMIN 72
>AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein.
Length = 966
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +2
Query: 302 YKFNVPPY--FSKTNDVPKQ*EML 367
++FNVPPY F + +D+P E++
Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 26.2 bits (55), Expect = 7.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 248 AL*STSSPLDG-PQSQSLFRSYGSNLPTSLTYIILSTRGSSPRRPA 114
A+ + SP P +Q LF S+G LP I + SSP + A
Sbjct: 13 AITRSKSPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSPSKIA 58
>AC006618-3|AAK68251.3| 960|Caenorhabditis elegans Patched related
family protein 4 protein.
Length = 960
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 20 ICGGVRILSADLENSGEGC 76
+CGG+ +L +DL++ GC
Sbjct: 825 VCGGLALLGSDLDSVSMGC 843
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,984,802
Number of Sequences: 27780
Number of extensions: 183257
Number of successful extensions: 528
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -