SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J20
         (383 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006641-4|AAF39819.2|  477|Caenorhabditis elegans Hypothetical ...    29   0.85 
Z46996-7|CAE17681.1|  152|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z49907-5|CAA90087.1|  327|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine r...    27   4.5  
AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear recep...    27   6.0  
AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear horm...    27   6.0  
AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear horm...    27   6.0  
Z74042-4|CAA98533.1|  265|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AJ561211-1|CAD99213.1|   82|Caenorhabditis elegans NAS-21 protei...    26   7.9  
AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.      26   7.9  
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    26   7.9  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    26   7.9  

>AC006641-4|AAF39819.2|  477|Caenorhabditis elegans Hypothetical
           protein F45D11.6 protein.
          Length = 477

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 170 SANWIRNFGIRIGSEDRPADSTCFKEPNMFFKDVFVY 280
           S  W++ F  R     R A +TC KEP+ F K +  Y
Sbjct: 124 STGWLQKFMRRHHLSTRRATTTCQKEPDEFAKKIVDY 160


>Z46996-7|CAE17681.1|  152|Caenorhabditis elegans Hypothetical
           protein C34C12.9 protein.
          Length = 152

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 234 RASKSLICSLRMSSYTTKASTFLTNSTFPLTFLKPMMFLNNKRC 365
           R+S     SLR    T   ST  T S+ P + + P MF N+++C
Sbjct: 77  RSSTGFYSSLRNLFSTGNPSTTTTISSIPESHINP-MFANHEKC 119


>Z49907-5|CAA90087.1|  327|Caenorhabditis elegans Hypothetical
           protein B0491.5 protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -3

Query: 279 YTKTSLKNILGSLKHVESAGRSSEPILIPKLRIQFADFPYLHY 151
           Y + S   + G   H +SAG    P+L  K+++  AD P   Y
Sbjct: 285 YQRHSETGLQGMTAHPQSAGIWGGPLLWQKMQLGNADVPTTRY 327


>U58752-5|AAO38681.1|  507|Caenorhabditis elegans Hypothetical
           protein B0218.1b protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 282 WYTKTSL--KNILGSLKHVESAGRSSEPILIPKL 187
           W+T T    + +L S KH+E+AG +  P   P+L
Sbjct: 269 WFTPTPALQRAVLESKKHLEAAGHTVIPFYPPRL 302


>U58752-4|AAB00667.1|  572|Caenorhabditis elegans Hypothetical
           protein B0218.1a protein.
          Length = 572

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 282 WYTKTSL--KNILGSLKHVESAGRSSEPILIPKL 187
           W+T T    + +L S KH+E+AG +  P   P+L
Sbjct: 334 WFTPTPALQRAVLESKKHLEAAGHTVIPFYPPRL 367


>AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine
           receptor, class w protein108 protein.
          Length = 196

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 204 LALRTVQRTRRASKSLICSLRMSSYTTKASTFLTNSTF 317
           L L  + + ++A K    SLR + +TTK   F+T + F
Sbjct: 65  LLLHALNKAKKARKKKKSSLRDTDHTTKLVVFMTAAFF 102


>AF083226-1|AAD03684.1|  560|Caenorhabditis elegans nuclear receptor
           NHR-8 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 35  RILSADLENSGEGCTWRCRAGSYPYPQQVS 124
           ++++   E S + CT +C+ G YP  Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178


>AF036702-12|AAP31437.1|  559|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform b protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 35  RILSADLENSGEGCTWRCRAGSYPYPQQVS 124
           ++++   E S + CT +C+ G YP  Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178


>AF036702-11|AAP31436.1|  560|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 8, isoform a protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 35  RILSADLENSGEGCTWRCRAGSYPYPQQVS 124
           ++++   E S + CT +C+ G YP  Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178


>Z74042-4|CAA98533.1|  265|Caenorhabditis elegans Hypothetical
           protein T11F9.5 protein.
          Length = 265

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 218 GPQSQSLFRSYGSNLPTSLTYIILS 144
           GP++   FR+ GS +P+   Y++++
Sbjct: 204 GPKNSKYFRTMGSQIPSYFDYLMIN 228


>Z67755-5|CAA91758.2|  966|Caenorhabditis elegans Hypothetical
           protein F54F7.5 protein.
          Length = 966

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +2

Query: 302 YKFNVPPY--FSKTNDVPKQ*EML 367
           ++FNVPPY  F + +D+P   E++
Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472


>AJ561211-1|CAD99213.1|   82|Caenorhabditis elegans NAS-21 protein
           protein.
          Length = 82

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 218 GPQSQSLFRSYGSNLPTSLTYIILS 144
           GP++   FR+ GS +P+   Y++++
Sbjct: 48  GPKNSKYFRTMGSQIPSYFDYLMIN 72


>AF200199-1|AAF13716.1|  966|Caenorhabditis elegans MES-1 protein.
          Length = 966

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +2

Query: 302 YKFNVPPY--FSKTNDVPKQ*EML 367
           ++FNVPPY  F + +D+P   E++
Sbjct: 449 FRFNVPPYVSFLQASDIPTSVELM 472


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -1

Query: 248 AL*STSSPLDG-PQSQSLFRSYGSNLPTSLTYIILSTRGSSPRRPA 114
           A+  + SP    P +Q LF S+G  LP      I +   SSP + A
Sbjct: 13  AITRSKSPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSPSKIA 58


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 20  ICGGVRILSADLENSGEGC 76
           +CGG+ +L +DL++   GC
Sbjct: 825 VCGGLALLGSDLDSVSMGC 843


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,984,802
Number of Sequences: 27780
Number of extensions: 183257
Number of successful extensions: 528
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -