Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J20
         (383 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58820.1 68418.m07370 subtilase family protein contains simil...    29   0.81 
At3g24560.3 68416.m03086 expressed protein  contains Pfam profil...    29   1.1  
At3g24560.2 68416.m03084 expressed protein  contains Pfam profil...    29   1.1  
At3g24560.1 68416.m03085 expressed protein  contains Pfam profil...    29   1.1  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   1.4  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    28   1.9  
At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein / antiterm...    28   2.5  
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica...    27   3.3  
At3g11760.1 68416.m01443 expressed protein                             26   7.5  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    26   7.5  
At3g58900.1 68416.m06564 F-box family protein contains F-box dom...    26   9.9  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    26   9.9  

>At5g58820.1 68418.m07370 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 703

 Score = 29.5 bits (63), Expect = 0.81
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -1

Query: 239 STSSPLDGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPRRPAADMGTNRRDISTY 75
           S S+ +D PQ++ ++  Y  +LP+ L Y  LS   S  +    D     R + +Y
Sbjct: 16  SVSAVIDDPQNKQVYVVYMGSLPSLLEYTPLSHHMSILQEVTGDSSVEGRLVRSY 70


>At3g24560.3 68416.m03086 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 456

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 297 KCSPSWYTKTSLKNILGSLKHVESAGRSSEPILI 196
           KCS S ++ +S +  L SLK + +A R S P+L+
Sbjct: 383 KCSTSNHSISSSQKALRSLKLIPAAARKSLPVLV 416


>At3g24560.2 68416.m03084 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 660

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 297 KCSPSWYTKTSLKNILGSLKHVESAGRSSEPILI 196
           KCS S ++ +S +  L SLK + +A R S P+L+
Sbjct: 587 KCSTSNHSISSSQKALRSLKLIPAAARKSLPVLV 620


>At3g24560.1 68416.m03085 expressed protein  contains Pfam profile
           PF01171: PP-loop family
          Length = 462

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 297 KCSPSWYTKTSLKNILGSLKHVESAGRSSEPILI 196
           KCS S ++ +S +  L SLK + +A R S P+L+
Sbjct: 389 KCSTSNHSISSSQKALRSLKLIPAAARKSLPVLV 422


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 20  ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 121
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
           identical to ubiquitin-protein ligase 1 [Arabidopsis
           thaliana] GI:7108521; E3, HECT-domain protein family;
           similar to GI:7108521, GB:AAF36454 from [Arabidopsis
           thaliana]
          Length = 3891

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 346 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL 245
           N++ F    G  EFV +++  V YED + E IR+
Sbjct: 534 NVVSF--FNGEPEFVNELVTLVSYEDTVPEKIRI 565


>At3g13180.1 68416.m01649 NOL1/NOP2/sun family protein /
           antitermination NusB domain-containing protein low
           similarity to SP|P36929 SUN protein (FMU protein)
           {Escherichia coli}; contains Pfam profiles PF01189:
           NOL1/NOP2/sun family, PF01029: NusB family
          Length = 523

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 264 LKNILGSLKHVESAGRSSEPILIPKLRI 181
           L +++GSL H E   R+ EP+L+  LRI
Sbjct: 126 LDHLIGSLCHNERTFRNMEPLLLQILRI 153


>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 981

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 152 ILSTRGSSPRRPAADMGTNRRDISTYIPHLNFQGPQRVSGHRR 24
           I  TR      P    G++RRD+ST  PH         +GH +
Sbjct: 15  IQETRTRPQHPPRIAEGSHRRDLSTLRPHFLSGSSSGANGHTK 57


>At3g11760.1 68416.m01443 expressed protein 
          Length = 702

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 294 CSPSWYTKTSLKNILGSLKHVESAGRSSEP 205
           C  ++  K   K ++  + H E AG  SEP
Sbjct: 612 CDQAYVLKFDHKTVIHKILHTEEAGSESEP 641


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 87  HLHVHPSPEFSRSAESIRTPPQMRCSSR 4
           H H   +P+ S S  S+RTPP  R +SR
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASR 256


>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 327

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -1

Query: 182 SNLPTSLTYIILSTRGSSPRRPAADMGTNRRDISTYIPHLNFQGPQRVSGHRRK 21
           S+LP  L Y ILS   +      + +    R++  ++P+L F     +    RK
Sbjct: 5   SSLPNELLYHILSFLSTKEAALTSVLSKRWRNLFAFVPYLEFDDSVFLHPEERK 58


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
           identical to ubiquitin-protein ligase 2 [Arabidopsis
           thaliana] GI:7108523; E3, HECT-domain protein family;
           similar to ubiquitin-protein ligase 2 GI:7108523 from
           [Arabidopsis thaliana]
          Length = 3658

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 346 NIIGFRKVRGNVEFVRKVLAFVVYEDILKEHIRL 245
           N++ F    G  EFV +++  V YED +   IR+
Sbjct: 285 NVVSF--FNGEPEFVNELVTLVSYEDTVPAKIRI 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,577,948
Number of Sequences: 28952
Number of extensions: 176140
Number of successful extensions: 506
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)