Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J19
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    28   0.71 
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   5.0  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   5.0  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   5.0  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   6.6  

>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 27  YYELKNYILILTLYFRHNFYEFEKLKTCPFYNF 125
           Y+++ N  +++TL   +NFY F+ L+    YNF
Sbjct: 551 YWKI-NQAMLVTLQRLYNFYRFQYLEEQSLYNF 582


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -2

Query: 240 NFLIPE-NRERKRGSREDAVIDDSLIN*MWLRSITTLSSKNYKKDMFSIFQTHKSYV*NI 64
           N  IPE NR     S +   ++D ++  + L++ T  ++ +      ++ Q H  +   I
Sbjct: 583 NLSIPESNRTNSSASSKSFTMNDLILPPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERI 642

Query: 63  MLKSVYNFLIRNKKI 19
             +  Y    +NK I
Sbjct: 643 PQRPSYRIEKQNKGI 657


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 378 SDK*SIIRFVSSGLGTPANTAETAKATN 295
           SD  S++  + SGL TPAN  +     N
Sbjct: 580 SDSLSLLTLLKSGLPTPANDLQNKSQNN 607


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -2

Query: 327 ANTAETAKATNRDLSILTSCKVPRQQNHVNFLIPENRER-KRGSREDAVIDDSLIN*MW 154
           +NT++   ++++D SI  +  V  Q+N +N  +    E  ++ S +D + D   ++ MW
Sbjct: 692 SNTSDKEGSSDKDSSIEEASSVKTQENGLNATLYIQMEYCEKLSLQDIIRDKIPVDEMW 750


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 114 FYNFSN*VLLLNAATSNLSKNHQSQHLPGSRVSVPDFQGSGSL 242
           FY FS   ++L +    +S+ +  + LPG+ + V  F   G L
Sbjct: 163 FYGFSAACMVLISTAIMISRTYHYRSLPGTWIFVLVFSAFGVL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,554,086
Number of Sequences: 5004
Number of extensions: 28391
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)