Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J19
         (430 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     29   1.2  
05_05_0153 - 22766805-22767023,22767662-22767940,22768294-227684...    29   1.6  
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811           29   2.1  
04_04_1371 + 32995337-32995358,32995745-32995822,32995876-329960...    27   4.9  
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395...    27   8.5  
05_04_0089 - 17821196-17821306,17821611-17821688,17821801-178218...    27   8.5  

>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 341 PEETKRMMDHLSDAEHYRNEHHNKQFDH 424
           P + +   DH S   H+R+ HH +Q  H
Sbjct: 123 PRDHRDQHDHQSQRHHHRHHHHQRQRHH 150


>05_05_0153 -
           22766805-22767023,22767662-22767940,22768294-22768401,
           22768500-22768779,22768871-22769174,22769367-22769975,
           22770186-22770411
          Length = 674

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 12  VFKFFYYELKNYILILTLYFRHNFYEFEK 98
           ++ FFYY+   ++ I+T   R N YEF+K
Sbjct: 466 LYDFFYYQ--EHLFIVTELLRANLYEFQK 492


>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
          Length = 359

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 344 EETKRMMDHLSDAEHYRNEHHNKQFDHD 427
           EE +R + H     H+ +EH N Q+D +
Sbjct: 295 EEEQRQLGHHHHQHHHEHEHENHQWDEE 322


>04_04_1371 +
           32995337-32995358,32995745-32995822,32995876-32996019,
           32997595-32997930,32998014-32998166,32998286-32998501,
           32998600-33000695
          Length = 1014

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 141 LLNAATSNLSKNHQSQHLPGSRVSVPDFQGSGS 239
           L N    NLS N  S  LPGS + +P    SGS
Sbjct: 249 LTNLKELNLSANGFSGSLPGSLLELPHLDPSGS 281


>07_03_0539 -
           19237573-19239169,19239258-19239410,19239505-19239566,
           19239855-19240103,19240248-19240337,19240453-19240632,
           19240713-19240942,19241558-19241735,19242327-19242432,
           19242786-19242883,19243683-19243813,19243908-19244087,
           19244179-19244443,19244557-19244627,19244707-19244922,
           19245147-19245294
          Length = 1317

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 344 EETKRMMDHLSDAEHYRNEHHNKQFDHD 427
           EE  + MD+ +D   Y  E HN  FD D
Sbjct: 356 EEMMQEMDYNADRAWYDCEEHNTMFDGD 383


>05_04_0089 -
           17821196-17821306,17821611-17821688,17821801-17821863,
           17822167-17823021,17823121-17823236,17823930-17824004,
           17826156-17826213
          Length = 451

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -2

Query: 330 PANTAETAKATNRDLSI-LTSCKVPRQQNHVNFLIPENRERKRGSREDAVIDDSLIN 163
           P  +AE+A      L++ L S     + N V+   PE  E    S+E A++ D+L+N
Sbjct: 306 PVISAESAHHWKETLNVSLESHFSSTETNVVSSECPETLENTSPSKEFAILRDTLVN 362


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,528,308
Number of Sequences: 37544
Number of extensions: 174786
Number of successful extensions: 385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)