Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J19
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)               27   5.0  
SB_46871| Best HMM Match : PAN (HMM E-Value=1)                         27   6.6  
SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)                     27   8.7  

>SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 315 ETAKATNRDLSILTSCKVPRQQNHVNFLIPENRERKR 205
           E  K TNR ++ +    +PR +N V++++ E  ER+R
Sbjct: 65  EAIKLTNRRVNAIEHVIIPRIENTVSYILGELDERER 101


>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
          Length = 434

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 270 CKVPRQQNHVNFLIPENRERKRGSREDAVIDDSLI 166
           C   +Q+ +VNF+  E  + K+G+ E  VI++  +
Sbjct: 362 CGRKKQKTNVNFIELETEKHKKGNGEATVIENGFL 396


>SB_46871| Best HMM Match : PAN (HMM E-Value=1)
          Length = 525

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -2

Query: 360 IRFVSSGLGTPANTAETAKATNRDLSILTSCKVPRQQNHVNFLIPENRERKRGSREDAVI 181
           ++  S+ + TPA  ++ A +TN  L   T+    ++Q   N  +P     K G  +  +I
Sbjct: 358 VQVPSTSISTPAEPSQQATSTNVRLDSRTNSSSSKRQKKTN--LP-----KSGENDVEII 410

Query: 180 DDSLI 166
           D SL+
Sbjct: 411 DRSLV 415


>SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 365 DHLSDAEHYRNEHHNKQFDHDA 430
           D  S+ +H+    H+ ++DHDA
Sbjct: 38  DSFSEQDHFPGGEHSSKYDHDA 59


>SB_37094| Best HMM Match : PH (HMM E-Value=0.0005)
          Length = 1007

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 336 GTPANTAETAKATNRDLSILTSCKV 262
           G+P++ + T+K T  DL I  SC+V
Sbjct: 314 GSPSDKSNTSKQTGSDLIIPQSCEV 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,215,366
Number of Sequences: 59808
Number of extensions: 208544
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)