BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_J18 (557 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 27 2.5 SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.5 SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 5.7 SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 25 7.5 SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 7.5 >SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces pombe|chr 3|||Manual Length = 505 Score = 26.6 bits (56), Expect = 2.5 Identities = 8/26 (30%), Positives = 16/26 (61%) Frame = -1 Query: 533 FIVIHEIRHNRFYRLSSECHKLFYPN 456 FI + +R + R+ + H+L++PN Sbjct: 400 FIAVSSLRFRKALRVQGKTHRLYFPN 425 >SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1236 Score = 26.6 bits (56), Expect = 2.5 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Frame = -3 Query: 318 SHFAVFTVCSTSAKDFISTAANRASEFLSDSCLIEINGTLVXPSQVQWTSLTLVTVNQSQ 139 S ++ + S+ IST +S S +I + TLV S S + V + S Sbjct: 638 SSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSS 697 Query: 138 PVP-SSVMLGDMPMETALPRNLSISA*ATTKSAEIITNFN 22 P+P SS ++ + + S+S A + S+ I T+ N Sbjct: 698 PIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVN 737 Score = 26.2 bits (55), Expect = 3.3 Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 3/132 (2%) Frame = -3 Query: 426 STIKVSPFGVNGAEYTT**LSSISLIAKNACSLSPHSHFAVFTVCST--SAKDFISTAAN 253 S+I P + + Y++ + S S + ++ SL S + S S+ +ST + Sbjct: 652 SSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSA 711 Query: 252 RASEFLSDSC-LIEINGTLVXPSQVQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNL 76 S S L ++ + P+ V S TL+T + S + SS+ + + N+ Sbjct: 712 SLSNITHSSLSLTAMSSSSAIPTSVN--SSTLITASSSNTLLSSITSSSAIVSSTTVSNI 769 Query: 75 SISA*ATTKSAE 40 S + + T S++ Sbjct: 770 SSNLPSATASSQ 781 >SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosaccharomyces pombe|chr 2|||Manual Length = 424 Score = 25.4 bits (53), Expect = 5.7 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = -2 Query: 184 GAMDFAYLGNGKPVTTS 134 GA YLGNGKP+ S Sbjct: 113 GAKQSKYLGNGKPIEAS 129 >SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces pombe|chr 1|||Manual Length = 404 Score = 25.0 bits (52), Expect = 7.5 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = +2 Query: 158 TKVSEVHCTCDGXTNVPLISIKQESDKNSDAR 253 T + + DG + ++++ ESDKNS A+ Sbjct: 256 TVIDSIIDAIDGISKSAVLALTSESDKNSSAK 287 >SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2|||Manual Length = 1217 Score = 25.0 bits (52), Expect = 7.5 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +3 Query: 93 PSPSAYLLTSRNLVLVVT 146 PSP +LT +NL LV+T Sbjct: 834 PSPRQLVLTKKNLYLVIT 851 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,232,966 Number of Sequences: 5004 Number of extensions: 44166 Number of successful extensions: 102 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 102 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 233995432 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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