Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J18
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0114 - 857835-859464,860403-860444,860530-860537                 29   3.3  
01_01_1102 - 8734984-8736090,8736430-8736557,8736671-8736708,873...    27   7.7  

>02_01_0114 - 857835-859464,860403-860444,860530-860537
          Length = 559

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 189 SQVQWTSLTLVTVNQSQPVPSSVMLGDMPMETALPRNLSI 70
           S V WT+L    V   QP+ +  + G M +E   P +++I
Sbjct: 229 STVSWTALITGHVQDKQPIQALELFGKMLLEGHRPNHITI 268


>01_01_1102 -
           8734984-8736090,8736430-8736557,8736671-8736708,
           8736815-8737030,8737252-8737413,8738381-8738559,
           8738693-8738799,8738918-8739082,8739201-8739284,
           8739364-8739559
          Length = 793

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 188 DGXTNVPLISIKQESDKNSDAR-FAAVEIKSFAEVEQ 295
           +G  NVP +SIK + D   +     AV + SF EV++
Sbjct: 237 NGIKNVPSLSIKSDPDGGIEIEDLVAVTVNSFQEVKR 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,072,382
Number of Sequences: 37544
Number of extensions: 275313
Number of successful extensions: 638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)