Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J18
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48175.1 68414.m05377 deaminase-related similar to tRNA-speci...    31   0.69 
At1g76160.1 68414.m08844 multi-copper oxidase type I family prot...    29   1.6  
At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2...    28   3.7  
At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to...    28   4.9  
At5g04690.1 68418.m00477 expressed protein                             27   6.4  
At4g38940.1 68417.m05518 kelch repeat-containing F-box family pr...    27   8.5  
At4g34270.1 68417.m04872 TIP41-like family protein contains Pfam...    27   8.5  

>At1g48175.1 68414.m05377 deaminase-related similar to tRNA-specific
           adenosine deaminase 2 (EC 3.5.4.-) (tRNA-specific
           adenosine-34 deaminase subunit TAD2) (Swiss-Prot:P47058)
           [Saccharomyces cerevisiae]
          Length = 122

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 358 FLNCQECVLFVTAFTFRCFHRLFYFCEGFYFHGCESCIRI 239
           ++ C+ C++  +A +F     ++Y C    F GC S + +
Sbjct: 31  YVTCEPCIMCASALSFLGIKEVYYGCPNDKFGGCGSILSL 70


>At1g76160.1 68414.m08844 multi-copper oxidase type I family protein
           similar to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Pfam profile:
           PF00394 Multicopper oxidase
          Length = 541

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 245 DARFAAVEIKSFAEVEQTVKTAKCECGDKEHAFLAIKEIDDNYYVVYSAPFTPNGLT 415
           D +   VE++    ++ T  +     G      +   +   +YYVV S+ FT N LT
Sbjct: 230 DHKMKVVEVEGTHTLQTTFSSLDVHVGQSYSVLVTADQTPRDYYVVVSSRFTSNVLT 286


>At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2.1)
           (GLR3) plant glutamate receptor family, PMID:11379626
          Length = 909

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 323 GDKEHAFLAIKEIDDN--YYVVYSAPFTPNGLTLIV 424
           G K  A +A   I  N   YV +S P+TP+G+ L+V
Sbjct: 522 GQKYDAVVADTTISSNRSMYVDFSLPYTPSGVGLVV 557


>At2g26690.1 68415.m03201 nitrate transporter (NTP2) identical to
           nitrate transporter (ntp2) [Arabidopsis thaliana]
           GI:4490321
          Length = 577

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 74  DKFLGRAVSIGISPNITELGTGCDWFTVTKVSEV 175
           D FLGR  +IGI   I  LGTG      TK+ E+
Sbjct: 90  DSFLGRFKTIGIFSTIQALGTGA-LAVATKLPEL 122


>At5g04690.1 68418.m00477 expressed protein
          Length = 625

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 323 GDKEHAFLAIKEIDDNYYVVYSAPFTPNGLTLIVLNARTIPTQADL 460
           GD+++ FLA K+ D N  V++ A + P    L  + + T+  Q +L
Sbjct: 375 GDRKYLFLADKDSDGN-SVLHLAGYPPPNYKLATVVSATLQMQREL 419


>At4g38940.1 68417.m05518 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 370

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 101 IGISPNITELGTGCDWFTVTKVSEVHCTCDGXTNVP 208
           +GI  NI  +G  C+W   + VS + C       +P
Sbjct: 126 VGIGSNIFVMGGFCNWKITSSVSLIDCRTHTAQTLP 161


>At4g34270.1 68417.m04872 TIP41-like family protein contains Pfam
           PF04176: TIP41-like family; identical to cDNA putative
           cytoskeletal protein mRNA, partial cds GI:5031529
          Length = 290

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 263 VEIKSFAEVEQTVKTAKCECGDKEHAFLAIKE--IDDNYYVVYSAPFTPNGLTLIVLNAR 436
           VE K+  + E T++   CE    + A L++KE  +  +  V+Y      NG++L+ +  R
Sbjct: 140 VEAKANPKGEATLQWENCE-DQIDLAALSLKEPILFYDEVVLYEDELADNGVSLLTVKVR 198

Query: 437 TIPT 448
            +P+
Sbjct: 199 VMPS 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,478,685
Number of Sequences: 28952
Number of extensions: 224651
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)