Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J17
(288 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 1.2
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 1.2
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 1.2
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ... 25 2.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 2.9
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 24 3.8
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 24 3.8
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 24 5.0
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 24 5.0
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 6.7
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 23 6.7
SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce... 23 8.8
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1258
Score = 25.8 bits (54), Expect = 1.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 159 SDFSTTVFCSTAGLLLISDNFCF 91
SDFS + FC LLL+ ++C+
Sbjct: 938 SDFSISQFCYLKKLLLVHGSWCY 960
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.8 bits (54), Expect = 1.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 193 IAFRRHLWRVYH*SNLDTHSWSLYTVHQRP 282
+A ++HL +NLDT+S Y +H+ P
Sbjct: 741 LAEKKHLKSQLMVANLDTYSLDCYEIHEFP 770
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 1.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 222 DPPQVPPKSNACGNLSCTALESDFSTTVFCSTAGLLLISDNFCFVCRRS 76
D P +PP+ + N S + ++ S T S + L + + CF RRS
Sbjct: 435 DKPSLPPRGLSEDNDSLSLQKTGSSDTRRSSFSTLKIPDSDICFTRRRS 483
>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 2.9
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -3
Query: 187 RESLMHCSRVRLLYD 143
+ESL+HC+R+R + D
Sbjct: 65 KESLLHCNRLRRIQD 79
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 2.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 225 IDPPQVPPKSNACGNL 178
+ PP PP+SNA G++
Sbjct: 336 LPPPPPPPRSNAAGSI 351
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 3.8
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +2
Query: 5 SRRQLTVSVAVALIACACAGPGANDLLQTKQKLSEISSKPAVEQKTVVE 151
+RR L + ++ +I C C G DL ++ + + P ++V E
Sbjct: 110 TRRVLEAADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAE 158
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 24.2 bits (50), Expect = 3.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 221 SIISPTWILTAGHCTLFTSGR 283
++ +PTW+ H L TSG+
Sbjct: 325 TVTNPTWLSLGNHFVLATSGQ 345
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 23.8 bits (49), Expect = 5.0
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 62 GPGANDLLQTKQKLSEISSKPAVEQKTVVEKSDSRAVHERFPHALLFGG 208
G G ++ ++ Q+LS+ S E + RA+ +++ H L+ GG
Sbjct: 79 GGGMHESVRA-QRLSKTLSVSLTEDDFCQSHTPFRALADKYKHVLVLGG 126
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 23.8 bits (49), Expect = 5.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 143 VVEKSDSRAVHERFPHALLFGGTCGGSIISPT 238
+ K D H+ HA GG CGG + T
Sbjct: 209 ITGKIDEPTRHDIIRHACPGGGACGGMYTANT 240
>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 23.4 bits (48), Expect = 6.7
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = -3
Query: 208 ASEKQCVRESLMHCSRVRLLYDC 140
+S K+ ++ +HC+ +++L DC
Sbjct: 117 SSLKETSTQNHLHCNDIKILQDC 139
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 23.4 bits (48), Expect = 6.7
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -1
Query: 255 PAVSIQVGLMIDPPQVPPKSNACGNLSCTALESDFSTTVFCSTAGLLLISDNFCFVCRRS 76
P S+ + PP P++ + N ++DF + + ST + +S+N R S
Sbjct: 262 PRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAVEKVSENLGSETRES 321
Query: 75 L--APGPAHAHAMSATATETV 19
L A A AH+ S A E +
Sbjct: 322 LQGAKPAAGAHS-SDNALEQI 341
>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 23.0 bits (47), Expect = 8.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 111 ISDNFCFVCRRSLAPGPAHAHAMSA 37
IS NFC R L P A AH + A
Sbjct: 186 ISKNFCEQVRAVLYPRFAEAHRVKA 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,137,125
Number of Sequences: 5004
Number of extensions: 18873
Number of successful extensions: 65
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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