BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_J17 (288 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ... 30 0.22 At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (... 28 0.91 At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ... 28 1.2 At4g18520.1 68417.m02745 pentatricopeptide (PPR) repeat-containi... 27 2.8 At3g62570.1 68416.m07029 DNAJ heat shock N-terminal domain-conta... 26 3.7 At1g72060.1 68414.m08330 expressed protein 26 3.7 At5g11700.1 68418.m01367 glycine-rich protein predicted protein,... 26 4.8 At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 26 4.8 At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 26 4.8 At3g55160.1 68416.m06126 expressed protein 25 6.4 At3g10320.1 68416.m01238 expressed protein contains Pfam domain,... 25 6.4 At1g58200.2 68414.m06607 mechanosensitive ion channel domain-con... 25 6.4 At1g58200.1 68414.m06606 mechanosensitive ion channel domain-con... 25 6.4 At5g44635.1 68418.m05469 minichromosome maintenance family prote... 25 8.4 At5g17210.2 68418.m02017 expressed protein 25 8.4 At5g17210.1 68418.m02016 expressed protein 25 8.4 At3g57380.1 68416.m06387 expressed protein contains Pfam domain,... 25 8.4 At2g41640.1 68415.m05145 expressed protein contains Pfam domain,... 25 8.4 >At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein contains tubulin-tyrosine ligase family domain, Pfam:PF03133 Length = 867 Score = 30.3 bits (65), Expect = 0.22 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -3 Query: 235 WTNDRPATGASEKQCVRESLMHCSRVRLLYDCF 137 W ND P SE+Q E L C + + CF Sbjct: 213 WLNDNPVLQKSERQMADEILQGCPSLEIYNSCF 245 >At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (IRX5) nearly identical to cellulose synthase [Arabidopsis thaliana] GI:27462651; contains Pfam profile PF03552: Cellulose synthase Length = 1049 Score = 28.3 bits (60), Expect = 0.91 Identities = 15/55 (27%), Positives = 26/55 (47%) Frame = +2 Query: 8 RRQLTVSVAVALIACACAGPGANDLLQTKQKLSEISSKPAVEQKTVVEKSDSRAV 172 R+++T + I C C G N + +K S I S + +K +KSD + + Sbjct: 592 RKKMTCDCWPSWICCCCGGGNRNHKSDSSKKKSGIKSLFSKLKKKTKKKSDDKTM 646 >At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein contains Pfam domain, PF00096: Zinc finger, C2H2 type Length = 452 Score = 27.9 bits (59), Expect = 1.2 Identities = 19/67 (28%), Positives = 29/67 (43%) Frame = +2 Query: 71 ANDLLQTKQKLSEISSKPAVEQKTVVEKSDSRAVHERFPHALLFGGTCGGSIISPTWILT 250 A LLQ ++ SS ++ + S S ++ PH L G CGG S L Sbjct: 329 ATALLQKAAQMGAASSGGSLLHGLGIVSSTSTSIDAIVPHGLGLGLPCGGESSSGLKELM 388 Query: 251 AGHCTLF 271 G+ ++F Sbjct: 389 MGNSSVF 395 >At4g18520.1 68417.m02745 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 581 Score = 26.6 bits (56), Expect = 2.8 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +2 Query: 80 LLQTKQKLSEISSKPAVEQKTVVEKSDSRAVHERFPHALLFG 205 L+Q + ++SEI + + T+ SDSR E H L G Sbjct: 6 LIQPRLRISEIPVTQSYKSPTICYSSDSRTKREEQRHVRLPG 47 >At3g62570.1 68416.m07029 DNAJ heat shock N-terminal domain-containing protein contains Pfam profiles PF00226: DnaJ domain, PF00515: TPR Domain Length = 552 Score = 26.2 bits (55), Expect = 3.7 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -1 Query: 87 CRRSLAPGPAHAHAMSATAT--ETVNCL 10 C ++LA P+ HA+ AT ETV CL Sbjct: 303 CNKTLALEPSCIHALETRATLLETVRCL 330 >At1g72060.1 68414.m08330 expressed protein Length = 81 Score = 26.2 bits (55), Expect = 3.7 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -1 Query: 255 PAVSIQVGLMIDPP----QVPPKSNAC-GNLSCTALESDFSTTVFCS 130 P +QV M P ++PP+ N C +CT SD STT+ CS Sbjct: 35 PLYCLQVEYMTCPSSGADKLPPRCNCCLAPKNCTLHLSD-STTIHCS 80 >At5g11700.1 68418.m01367 glycine-rich protein predicted protein, Arabidopsis thaliana Length = 1411 Score = 25.8 bits (54), Expect = 4.8 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +2 Query: 170 VHERFPHALLFGGTCGGSIISP 235 +H+RFP +LFGG GS ++P Sbjct: 1084 LHQRFPMPILFGG--DGSYMAP 1103 >At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 WD-40 repeats domain (PF00400) (6 weak) Length = 1120 Score = 25.8 bits (54), Expect = 4.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 80 LLQTKQKLSEISSKPAVEQKTVVEKSDS 163 LL T + LS SSKPA+ +VE+ S Sbjct: 676 LLHTVENLSSESSKPAINSIPMVERPAS 703 >At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 WD-40 repeats domain (PF00400) (6 weak) Length = 1120 Score = 25.8 bits (54), Expect = 4.8 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +2 Query: 80 LLQTKQKLSEISSKPAVEQKTVVEKSDS 163 LL T + LS SSKPA+ +VE+ S Sbjct: 676 LLHTVENLSSESSKPAINSIPMVERPAS 703 >At3g55160.1 68416.m06126 expressed protein Length = 2149 Score = 25.4 bits (53), Expect = 6.4 Identities = 15/45 (33%), Positives = 21/45 (46%) Frame = +2 Query: 14 QLTVSVAVALIACACAGPGANDLLQTKQKLSEISSKPAVEQKTVV 148 +L V L+A GP + +LS +S + VEQK VV Sbjct: 572 ELDVDSIFLLLAYISIGPSEEETKLNYTELSNMSMELTVEQKVVV 616 >At3g10320.1 68416.m01238 expressed protein contains Pfam domain, PF04577: Protein of unknown function (DUF563) Length = 494 Score = 25.4 bits (53), Expect = 6.4 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = +3 Query: 177 RDSRTHCFSEAPVAGLSL 230 +D RTHCF EA + GL + Sbjct: 253 KDKRTHCFKEA-IVGLRI 269 >At1g58200.2 68414.m06607 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein contains Pfam profile PF00924: Mechanosensitive ion channel Length = 678 Score = 25.4 bits (53), Expect = 6.4 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = -1 Query: 186 GNLSCTALESDFSTTVFCSTAGLLLISDNFC--FVCRRSLAPG 64 G SC + +S + S +G ++ + C FVCR +L+PG Sbjct: 41 GLSSCATRQDVWSLQLLESLSGSIVPVSSRCNAFVCRSALSPG 83 >At1g58200.1 68414.m06606 mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein contains Pfam profile PF00924: Mechanosensitive ion channel Length = 678 Score = 25.4 bits (53), Expect = 6.4 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = -1 Query: 186 GNLSCTALESDFSTTVFCSTAGLLLISDNFC--FVCRRSLAPG 64 G SC + +S + S +G ++ + C FVCR +L+PG Sbjct: 41 GLSSCATRQDVWSLQLLESLSGSIVPVSSRCNAFVCRSALSPG 83 >At5g44635.1 68418.m05469 minichromosome maintenance family protein / MCM family protein similar to SP|P97311 DNA replication licensing factor MCM6 {Mus musculus}; contains Pfam profile PF00493: MCM2/3/5 family Length = 831 Score = 25.0 bits (52), Expect = 8.4 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -1 Query: 201 KSNACGNLSCTALESDFSTTVFCSTAGLLLISDN 100 KS++ L+ T + T FC AG L+++DN Sbjct: 421 KSSSAAGLTATVAKEP-ETGEFCIEAGALMLADN 453 >At5g17210.2 68418.m02017 expressed protein Length = 175 Score = 25.0 bits (52), Expect = 8.4 Identities = 10/34 (29%), Positives = 18/34 (52%) Frame = -1 Query: 168 ALESDFSTTVFCSTAGLLLISDNFCFVCRRSLAP 67 A F++ +F A +++ + CF CR+ AP Sbjct: 20 AFNLGFTSALFLMMAQIIVSVSSGCFCCRKGPAP 53 >At5g17210.1 68418.m02016 expressed protein Length = 209 Score = 25.0 bits (52), Expect = 8.4 Identities = 10/34 (29%), Positives = 18/34 (52%) Frame = -1 Query: 168 ALESDFSTTVFCSTAGLLLISDNFCFVCRRSLAP 67 A F++ +F A +++ + CF CR+ AP Sbjct: 54 AFNLGFTSALFLMMAQIIVSVSSGCFCCRKGPAP 87 >At3g57380.1 68416.m06387 expressed protein contains Pfam domain, PF04577: Protein of unknown function (DUF563) Length = 504 Score = 25.0 bits (52), Expect = 8.4 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +3 Query: 180 DSRTHCFSEAPVAGLSL 230 D RTHCF EA + GL + Sbjct: 252 DKRTHCFKEA-IVGLKI 267 >At2g41640.1 68415.m05145 expressed protein contains Pfam domain, PF04577: Protein of unknown function (DUF563) Length = 500 Score = 25.0 bits (52), Expect = 8.4 Identities = 9/12 (75%), Positives = 10/12 (83%) Frame = +3 Query: 180 DSRTHCFSEAPV 215 D+RTHCF EA V Sbjct: 250 DTRTHCFKEATV 261 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,166,277 Number of Sequences: 28952 Number of extensions: 108651 Number of successful extensions: 353 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 352 length of database: 12,070,560 effective HSP length: 69 effective length of database: 10,072,872 effective search space used: 261894672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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