Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J17
         (288 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    30   0.22 
At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (...    28   0.91 
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ...    28   1.2  
At4g18520.1 68417.m02745 pentatricopeptide (PPR) repeat-containi...    27   2.8  
At3g62570.1 68416.m07029 DNAJ heat shock N-terminal domain-conta...    26   3.7  
At1g72060.1 68414.m08330 expressed protein                             26   3.7  
At5g11700.1 68418.m01367 glycine-rich protein predicted protein,...    26   4.8  
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    26   4.8  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    26   4.8  
At3g55160.1 68416.m06126 expressed protein                             25   6.4  
At3g10320.1 68416.m01238 expressed protein contains Pfam domain,...    25   6.4  
At1g58200.2 68414.m06607 mechanosensitive ion channel domain-con...    25   6.4  
At1g58200.1 68414.m06606 mechanosensitive ion channel domain-con...    25   6.4  
At5g44635.1 68418.m05469 minichromosome maintenance family prote...    25   8.4  
At5g17210.2 68418.m02017 expressed protein                             25   8.4  
At5g17210.1 68418.m02016 expressed protein                             25   8.4  
At3g57380.1 68416.m06387 expressed protein contains Pfam domain,...    25   8.4  
At2g41640.1 68415.m05145 expressed protein contains Pfam domain,...    25   8.4  

>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 235 WTNDRPATGASEKQCVRESLMHCSRVRLLYDCF 137
           W ND P    SE+Q   E L  C  + +   CF
Sbjct: 213 WLNDNPVLQKSERQMADEILQGCPSLEIYNSCF 245


>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit
           (IRX5) nearly identical to cellulose synthase
           [Arabidopsis thaliana] GI:27462651; contains Pfam
           profile PF03552: Cellulose synthase
          Length = 1049

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 8   RRQLTVSVAVALIACACAGPGANDLLQTKQKLSEISSKPAVEQKTVVEKSDSRAV 172
           R+++T     + I C C G   N    + +K S I S  +  +K   +KSD + +
Sbjct: 592 RKKMTCDCWPSWICCCCGGGNRNHKSDSSKKKSGIKSLFSKLKKKTKKKSDDKTM 646


>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 452

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = +2

Query: 71  ANDLLQTKQKLSEISSKPAVEQKTVVEKSDSRAVHERFPHALLFGGTCGGSIISPTWILT 250
           A  LLQ   ++   SS  ++     +  S S ++    PH L  G  CGG   S    L 
Sbjct: 329 ATALLQKAAQMGAASSGGSLLHGLGIVSSTSTSIDAIVPHGLGLGLPCGGESSSGLKELM 388

Query: 251 AGHCTLF 271
            G+ ++F
Sbjct: 389 MGNSSVF 395


>At4g18520.1 68417.m02745 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 581

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 80  LLQTKQKLSEISSKPAVEQKTVVEKSDSRAVHERFPHALLFG 205
           L+Q + ++SEI    + +  T+   SDSR   E   H  L G
Sbjct: 6   LIQPRLRISEIPVTQSYKSPTICYSSDSRTKREEQRHVRLPG 47


>At3g62570.1 68416.m07029 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profiles
           PF00226: DnaJ domain, PF00515: TPR Domain
          Length = 552

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 87  CRRSLAPGPAHAHAMSATAT--ETVNCL 10
           C ++LA  P+  HA+   AT  ETV CL
Sbjct: 303 CNKTLALEPSCIHALETRATLLETVRCL 330


>At1g72060.1 68414.m08330 expressed protein
          Length = 81

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -1

Query: 255 PAVSIQVGLMIDPP----QVPPKSNAC-GNLSCTALESDFSTTVFCS 130
           P   +QV  M  P     ++PP+ N C    +CT   SD STT+ CS
Sbjct: 35  PLYCLQVEYMTCPSSGADKLPPRCNCCLAPKNCTLHLSD-STTIHCS 80


>At5g11700.1 68418.m01367 glycine-rich protein predicted protein,
            Arabidopsis thaliana
          Length = 1411

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 170  VHERFPHALLFGGTCGGSIISP 235
            +H+RFP  +LFGG   GS ++P
Sbjct: 1084 LHQRFPMPILFGG--DGSYMAP 1103


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 80  LLQTKQKLSEISSKPAVEQKTVVEKSDS 163
           LL T + LS  SSKPA+    +VE+  S
Sbjct: 676 LLHTVENLSSESSKPAINSIPMVERPAS 703


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 80  LLQTKQKLSEISSKPAVEQKTVVEKSDS 163
           LL T + LS  SSKPA+    +VE+  S
Sbjct: 676 LLHTVENLSSESSKPAINSIPMVERPAS 703


>At3g55160.1 68416.m06126 expressed protein
          Length = 2149

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 14  QLTVSVAVALIACACAGPGANDLLQTKQKLSEISSKPAVEQKTVV 148
           +L V     L+A    GP   +      +LS +S +  VEQK VV
Sbjct: 572 ELDVDSIFLLLAYISIGPSEEETKLNYTELSNMSMELTVEQKVVV 616


>At3g10320.1 68416.m01238 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 494

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 177 RDSRTHCFSEAPVAGLSL 230
           +D RTHCF EA + GL +
Sbjct: 253 KDKRTHCFKEA-IVGLRI 269


>At1g58200.2 68414.m06607 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 678

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 186 GNLSCTALESDFSTTVFCSTAGLLLISDNFC--FVCRRSLAPG 64
           G  SC   +  +S  +  S +G ++   + C  FVCR +L+PG
Sbjct: 41  GLSSCATRQDVWSLQLLESLSGSIVPVSSRCNAFVCRSALSPG 83


>At1g58200.1 68414.m06606 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 678

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 186 GNLSCTALESDFSTTVFCSTAGLLLISDNFC--FVCRRSLAPG 64
           G  SC   +  +S  +  S +G ++   + C  FVCR +L+PG
Sbjct: 41  GLSSCATRQDVWSLQLLESLSGSIVPVSSRCNAFVCRSALSPG 83


>At5g44635.1 68418.m05469 minichromosome maintenance family protein
           / MCM family protein similar to SP|P97311 DNA
           replication licensing factor MCM6 {Mus musculus};
           contains Pfam profile PF00493: MCM2/3/5 family
          Length = 831

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 201 KSNACGNLSCTALESDFSTTVFCSTAGLLLISDN 100
           KS++   L+ T  +    T  FC  AG L+++DN
Sbjct: 421 KSSSAAGLTATVAKEP-ETGEFCIEAGALMLADN 453


>At5g17210.2 68418.m02017 expressed protein
          Length = 175

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 168 ALESDFSTTVFCSTAGLLLISDNFCFVCRRSLAP 67
           A    F++ +F   A +++   + CF CR+  AP
Sbjct: 20  AFNLGFTSALFLMMAQIIVSVSSGCFCCRKGPAP 53


>At5g17210.1 68418.m02016 expressed protein
          Length = 209

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 168 ALESDFSTTVFCSTAGLLLISDNFCFVCRRSLAP 67
           A    F++ +F   A +++   + CF CR+  AP
Sbjct: 54  AFNLGFTSALFLMMAQIIVSVSSGCFCCRKGPAP 87


>At3g57380.1 68416.m06387 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 504

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 180 DSRTHCFSEAPVAGLSL 230
           D RTHCF EA + GL +
Sbjct: 252 DKRTHCFKEA-IVGLKI 267


>At2g41640.1 68415.m05145 expressed protein contains Pfam domain,
           PF04577: Protein of unknown function (DUF563)
          Length = 500

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 180 DSRTHCFSEAPV 215
           D+RTHCF EA V
Sbjct: 250 DTRTHCFKEATV 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,166,277
Number of Sequences: 28952
Number of extensions: 108651
Number of successful extensions: 353
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 261894672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)