Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J16
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   3.9  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   5.2  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   6.9  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    25   6.9  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   9.1  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    25   9.1  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 632 SAPTSPSVPLQPSRPGYQHTRLTLRTYLPY*SSETLSTRLAS 507
           + P +P+VP   S      T  T  T +PY S+   ST LA+
Sbjct: 406 TTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLAT 447


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
 Frame = -3

Query: 501 LLALEDLENLFAPFV--LWDLADLRRLH-VRGDLLCQWVQG----CQEIPCYPFLRNILA 343
           +L L DL + F   +  + D     R+H +R  +    V      CQ +P Y   RN++ 
Sbjct: 256 ILVLRDLTSRFIDMIHDICDSVLFSRIHDIRASIRIVCVTALYDCCQLLPTYLINRNLIR 315

Query: 342 HNNQSLCNCDPQ 307
           H+   L + + Q
Sbjct: 316 HSGWGLSDAESQ 327


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 504 HLLALEDLENLFAPF 460
           H+LA  DLEN F PF
Sbjct: 355 HMLAASDLENPFVPF 369


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 363 FLRNILAHNNQSLCNCDPQ 307
           FLRN+L HN+Q   +  P+
Sbjct: 194 FLRNVLVHNDQRAISAAPE 212


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/14 (64%), Positives = 11/14 (78%), Gaps = 1/14 (7%)
 Frame = -3

Query: 42  LPWHEARCA-RIPC 4
           LPW+E RCA  +PC
Sbjct: 92  LPWNEIRCAIHVPC 105


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -1

Query: 185 LWFRRLWLFPCRRWPSSRIYFIPFRIFVVLCANS 84
           +W  R  LFPC R   S + + P ++  +  A+S
Sbjct: 507 VWLDRTNLFPCNRSTRSTLPYRPTKLLDLASASS 540


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +3

Query: 273 VYDPITKQRTAAVDRNCTATGCCVPKCFAEKGNRGFPGSPGPTGIRGLPGHEG 431
           V DP+   RT  VD +  A+     +C             GP G+ G+ G  G
Sbjct: 528 VLDPLKVVRTGLVDASGVASLMGTTECAIVDAPEESKAPAGPPGMGGMGGMPG 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,313
Number of Sequences: 5004
Number of extensions: 50315
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)