Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J16
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982           36   0.035
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    30   1.8  
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677...    29   3.1  
07_03_0744 + 21121757-21122202,21122316-21122737,21122992-211231...    28   5.4  
11_04_0250 + 15335457-15335882                                         28   7.1  
09_04_0220 - 15813809-15815380                                         28   7.1  
05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    28   7.1  

>01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982
          Length = 301

 Score = 35.5 bits (78), Expect = 0.035
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 270 AVYDPITKQRTAAVDRNCTAT---GCCVPKCFAEKGNRGFPGSPGPTGIRGLPGHEG 431
           A + P+ + RT  V++  T     G   P C      R FPG  G T    +PGH G
Sbjct: 24  AAFVPVAESRTTPVEKTTTTQAEDGVKKPDCVPAFDPRSFPGHGGTTTPTPIPGHHG 80


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = -1

Query: 632 SAPTSPSVPLQPSRPGYQHTRLTLRTYLPY*SSETLSTRLASVTFWPSRTLRTYLPLLSF 453
           SAP SPS    P+ PG  ++  T     P  SS+T  T      + P+ T+    P  S 
Sbjct: 413 SAPPSPSSGTSPTTPGGGYSPSTPCNAPPSPSSDTSPTTPGGGNYPPAPTIGNVPPSPSS 472

Query: 452 GT 447
           GT
Sbjct: 473 GT 474


>06_01_0883 +
           6768998-6769381,6769518-6769616,6769664-6769726,
           6770883-6770931,6771338-6771405,6771463-6771715,
           6772244-6772380,6772708-6772821,6773059-6773258,
           6773367-6773561,6773650-6773812
          Length = 574

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -1

Query: 158 PCRRWPSSRIYFIPFRIFVVLCANSRNRYQSSYQPIYV 45
           PCR W    +  I F IF+  CA     Y   Y  +Y+
Sbjct: 515 PCRFWDRWTMSEILFSIFLFFCATYNLAYGGDYYFVYI 552


>07_03_0744 +
           21121757-21122202,21122316-21122737,21122992-21123117,
           21123198-21123319,21123413-21123623,21123955-21124192,
           21124284-21124431,21124547-21124879
          Length = 681

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 312 DRNCTATGCCVPKCFAEKGNRGFPGSPGPT 401
           D N +A G CV   FA+ G R  PG  G T
Sbjct: 89  DVNASACGACVAAAFAD-GKRSCPGIKGAT 117


>11_04_0250 + 15335457-15335882
          Length = 141

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 282 PITKQRTAAVDRNCTATGCCVPKCFAEKGNRGFPGSPGPTGIRGLPGHEGA 434
           P+ K++T   + +    GC V +    + +RG P + G  G+R   G  GA
Sbjct: 2   PVAKKQTLVAEADVQRRGCAVLRISDRRQSRGGPTAGG--GVRRAGGWGGA 50


>09_04_0220 - 15813809-15815380
          Length = 523

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 630 SSNFTISTIATVSTWIPAYQAHPEDLSALLIQ 535
           SS    +T+A + TWI A +  P D+S +LI+
Sbjct: 417 SSAAAAATMAGLETWIDAAEITPADVSEVLIK 448


>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 353 TFWHTTTSRCAIAIHSSSALFRNGVVYS 270
           TFW  TT +CA A H   +L   G+ YS
Sbjct: 98  TFWFFTTFQCAPAGHQHVSLNFRGINYS 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,332,590
Number of Sequences: 37544
Number of extensions: 349442
Number of successful extensions: 983
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)