BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I10A02NGRL0006_J16 (632 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 36 0.035 01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 1.8 06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677... 29 3.1 07_03_0744 + 21121757-21122202,21122316-21122737,21122992-211231... 28 5.4 11_04_0250 + 15335457-15335882 28 7.1 09_04_0220 - 15813809-15815380 28 7.1 05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682... 28 7.1 >01_01_0716 - 5548908-5549235,5549327-5549768,5549847-5549982 Length = 301 Score = 35.5 bits (78), Expect = 0.035 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%) Frame = +3 Query: 270 AVYDPITKQRTAAVDRNCTAT---GCCVPKCFAEKGNRGFPGSPGPTGIRGLPGHEG 431 A + P+ + RT V++ T G P C R FPG G T +PGH G Sbjct: 24 AAFVPVAESRTTPVEKTTTTQAEDGVKKPDCVPAFDPRSFPGHGGTTTPTPIPGHHG 80 >01_06_0565 + 30287253-30287502,30287522-30289010,30289133-30289277, 30289679-30289729 Length = 644 Score = 29.9 bits (64), Expect = 1.8 Identities = 21/62 (33%), Positives = 28/62 (45%) Frame = -1 Query: 632 SAPTSPSVPLQPSRPGYQHTRLTLRTYLPY*SSETLSTRLASVTFWPSRTLRTYLPLLSF 453 SAP SPS P+ PG ++ T P SS+T T + P+ T+ P S Sbjct: 413 SAPPSPSSGTSPTTPGGGYSPSTPCNAPPSPSSDTSPTTPGGGNYPPAPTIGNVPPSPSS 472 Query: 452 GT 447 GT Sbjct: 473 GT 474 >06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726, 6770883-6770931,6771338-6771405,6771463-6771715, 6772244-6772380,6772708-6772821,6773059-6773258, 6773367-6773561,6773650-6773812 Length = 574 Score = 29.1 bits (62), Expect = 3.1 Identities = 13/38 (34%), Positives = 17/38 (44%) Frame = -1 Query: 158 PCRRWPSSRIYFIPFRIFVVLCANSRNRYQSSYQPIYV 45 PCR W + I F IF+ CA Y Y +Y+ Sbjct: 515 PCRFWDRWTMSEILFSIFLFFCATYNLAYGGDYYFVYI 552 >07_03_0744 + 21121757-21122202,21122316-21122737,21122992-21123117, 21123198-21123319,21123413-21123623,21123955-21124192, 21124284-21124431,21124547-21124879 Length = 681 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +3 Query: 312 DRNCTATGCCVPKCFAEKGNRGFPGSPGPT 401 D N +A G CV FA+ G R PG G T Sbjct: 89 DVNASACGACVAAAFAD-GKRSCPGIKGAT 117 >11_04_0250 + 15335457-15335882 Length = 141 Score = 27.9 bits (59), Expect = 7.1 Identities = 15/51 (29%), Positives = 25/51 (49%) Frame = +3 Query: 282 PITKQRTAAVDRNCTATGCCVPKCFAEKGNRGFPGSPGPTGIRGLPGHEGA 434 P+ K++T + + GC V + + +RG P + G G+R G GA Sbjct: 2 PVAKKQTLVAEADVQRRGCAVLRISDRRQSRGGPTAGG--GVRRAGGWGGA 50 >09_04_0220 - 15813809-15815380 Length = 523 Score = 27.9 bits (59), Expect = 7.1 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3 Query: 630 SSNFTISTIATVSTWIPAYQAHPEDLSALLIQ 535 SS +T+A + TWI A + P D+S +LI+ Sbjct: 417 SSAAAAATMAGLETWIDAAEITPADVSEVLIK 448 >05_04_0186 + 18866762-18866949,18867207-18867345,18868068-18868295, 18869023-18869081,18869411-18869482,18870239-18870287, 18870431-18870661,18872018-18872187,18872274-18872478, 18872826-18873494,18873592-18873819,18873901-18874689 Length = 1008 Score = 27.9 bits (59), Expect = 7.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 353 TFWHTTTSRCAIAIHSSSALFRNGVVYS 270 TFW TT +CA A H +L G+ YS Sbjct: 98 TFWFFTTFQCAPAGHQHVSLNFRGINYS 125 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,332,590 Number of Sequences: 37544 Number of extensions: 349442 Number of successful extensions: 983 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 935 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 981 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1549385732 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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