Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J16
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02670.1 68416.m00258 proline-rich family protein contains pr...    31   0.64 
At2g37410.2 68415.m04588 mitochondrial import inner membrane tra...    29   3.4  
At2g37410.1 68415.m04587 mitochondrial import inner membrane tra...    29   3.4  
At1g25580.1 68414.m03176 no apical meristem (NAM) family protein...    28   5.9  
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy...    28   5.9  
At1g64450.1 68414.m07306 proline-rich family protein contains pr...    27   7.8  

>At3g02670.1 68416.m00258 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 217

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 366 GNRGFPGSPGPTGIRGLPGHEG 431
           GN G PG PG  G+ G+PG  G
Sbjct: 109 GNPGIPGIPGIPGLPGIPGSPG 130



 Score = 25.4 bits (53), Expect(2) = 2.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 378 FPGSPGPTGIRGLPGHEG 431
           FP SPG   I G+PG  G
Sbjct: 137 FPSSPGGGSIPGIPGSPG 154



 Score = 22.6 bits (46), Expect(2) = 2.0
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 366 GNRGFPGSPG 395
           GN G PGSPG
Sbjct: 87  GNPGIPGSPG 96


>At2g37410.2 68415.m04588 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 366 GNRGFPGSPGPTGIRGLPGHEGAE 437
           G +G  G PG  G++G+PG +G +
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQGMQ 178



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 360 EKGNRGFPGSPGPTGIRGLPGHEG 431
           + G +G PG  G  G+ G+PG +G
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQG 170


>At2g37410.1 68415.m04587 mitochondrial import inner membrane
           translocase (TIM17) nearly identical to SP|Q9SP35
           Mitochondrial import inner membrane translocase subunit
           TIM17 {Arabidopsis thaliana}
          Length = 243

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 366 GNRGFPGSPGPTGIRGLPGHEGAE 437
           G +G  G PG  G++G+PG +G +
Sbjct: 155 GMQGMQGMPGMPGMQGMPGMQGMQ 178



 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 360 EKGNRGFPGSPGPTGIRGLPGHEG 431
           + G +G PG  G  G+ G+PG +G
Sbjct: 147 DPGMQGMPGMQGMQGMPGMPGMQG 170


>At1g25580.1 68414.m03176 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to putative NAM protein (GP:21554371)
           (Arabidopsis thaliana)
          Length = 449

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 325 QRLVVVCQNVSQKRVTGDFLAALDPLA*EVSPDMKAPKVR 444
           Q+LVV   + +++ V+ D  AA+ P A  V+P +  P+ R
Sbjct: 214 QQLVVKRGDKAEQEVSEDIFAAVTPTADPVTPKLATPEPR 253


>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
           cytochrome P450 SP:O48927 from [Glycine max]
          Length = 535

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 624 NFTISTIATVSTWIPAYQAHPEDLSALL 541
           +F ++T+     W+P+ +A+P DLS +L
Sbjct: 487 SFWVATLLHEFEWLPSVEANPPDLSEVL 514


>At1g64450.1 68414.m07306 proline-rich family protein contains
           proline rich extensins, INTERPRO:IPR0002965
          Length = 342

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 547 PTNPVKP*APGLPLSPFGPRGP*EPICP 464
           P NP  P  PG P +P  PR P  P  P
Sbjct: 196 PRNPGSPEFPGNPGAPIIPRNPGSPEFP 223


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,697,551
Number of Sequences: 28952
Number of extensions: 273538
Number of successful extensions: 775
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)