Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J12
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 29 0.51
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 2.1
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 3.6
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 26 3.6
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 3.6
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 26 3.6
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 25 4.8
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 25 6.3
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 8.4
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3... 25 8.4
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.51
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Frame = -3
Query: 239 RGSAVRKSVQCS---PPLWGYVQVYNSQMP 159
+G ++ KS CS PPL G+V V+N Q P
Sbjct: 256 KGKSIIKSQNCSDGLPPLPGFVVVFNLQSP 285
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 2.1
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 299 PTNLSL-VSAPLDVRGSSIQTVKFPEFHRYTPIRVVKLVLIPKSKVY*ATQKFAPNLLTP 475
PT L SA DVR +S + +FH+Y+ +L + + T+ F P+ +T
Sbjct: 51 PTELKARTSATFDVRSASTSPINASDFHKYSHDPFQRLFKAKGNASFSKTKSF-PSSVTY 109
Query: 476 TKTE 487
+ +E
Sbjct: 110 SPSE 113
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 3.6
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +1
Query: 313 LGISTTGRTWKLDSDSEISGVPPI------HADKGGEAGPYTKVQGLLSYPEIC 456
LG+S G+T+ L S+ GV + +A KG EA P T V+ L S E C
Sbjct: 93 LGVSGAGKTYTLFGPSDRPGVAFLALDALFYAIKGREASPQT-VEFLRSQLEKC 145
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 382 IHADKGGEAGPYTKVQGLLSY 444
+H + G AG Y KV+G + Y
Sbjct: 562 LHKKQSGGAGQYAKVEGYIEY 582
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 69 CILGFTLSACFISRTRAVKPS 7
CI GF ++ + +RTR + PS
Sbjct: 325 CIAGFVVNELYTTRTRIIAPS 345
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.8 bits (54), Expect = 3.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 151 DNVDQVYDAWDVKVNGAIYVWQ 86
D VD++YDAW N WQ
Sbjct: 54 DYVDEMYDAWKKDPNSVHASWQ 75
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 4.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 69 CILGFTLSACFISRTRAVKPS 7
CI GF ++ + +RTR + PS
Sbjct: 325 CIAGFVVNEFYTTRTRIITPS 345
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 6.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 110 YFDVPSIINLVDIVNIQAFDYYTPERNPKEAD 205
Y D P I+ V +N+ D T + NP + D
Sbjct: 68 YPDAPPIVTFVSRINLPGVDGETGKVNPHKID 99
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 8.4
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 284 KMVRLPTNLSLVSAPLDVR---GSSIQTVKFPEFHRYTP 391
+++ +P NL+ PL GSS +T + PEF TP
Sbjct: 144 ELIMVPPNLA--GKPLSANSSFGSSAKTFQLPEFDSVTP 180
>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 103
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 20 ALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINL 139
AL+R A++ K S LP+++ I+ PSI N+
Sbjct: 2 ALLRGNSLAISQKMLSVFQASALPHISLRIFISPPSIANI 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,790
Number of Sequences: 5004
Number of extensions: 46895
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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