Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J12
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861 32 0.22
04_03_0649 - 18402976-18403220,18403305-18404499 31 0.39
12_02_0239 - 16125105-16126025,16126966-16127415 30 0.90
11_04_0234 + 15187065-15188241,15188316-15188494 29 1.6
12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718 29 2.1
03_05_1021 - 29750155-29750220,29750342-29750428,29750614-297507... 29 2.1
12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156 28 3.6
08_02_0113 - 12715888-12716181,12717443-12717602,12718327-127183... 28 4.8
12_02_0292 + 16979550-16980662,16983249-16983731 27 6.3
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 27 6.3
05_03_0191 - 9521496-9521921 27 6.3
12_02_0362 + 17998110-17998345,17998877-17998958,18000309-180003... 27 8.4
07_03_1383 + 26172329-26172448,26172770-26172961 27 8.4
05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336... 27 8.4
02_05_0272 - 27348537-27348728,27349035-27349192,27349292-273493... 27 8.4
>12_02_0232 - 16015174-16015244,16015861-16016671,16018412-16018861
Length = 443
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 23 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 148
LVR+ K + K NMQL++ +LP Y V I DI
Sbjct: 340 LVRKAKHEMKTKENMQLMVDLLPLWREKPYIKVERIFETCDI 381
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 31.5 bits (68), Expect = 0.39
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 271 ITGIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPE 450
++ + G P K+V+GI GR+W L + + P+ A + G + G +SY E
Sbjct: 266 VSWLDAGVPASKVVMGIPLYGRSWFLRNKANSGVGAPVVAAGPKQRG--SNATGAMSYAE 323
Query: 451 I 453
+
Sbjct: 324 V 324
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 30.3 bits (65), Expect = 0.90
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 23 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 148
LVR+ K + + NMQL++ V+P Y V I DI
Sbjct: 340 LVRKAKHKIRTEENMQLMVDVMPLWYEKPYIKVQRIFETCDI 381
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 271 ITGIQNGAPTHKLVLGISTTGRTWKL-DSDSEISGVPPIHADKGGEAGPYTKVQGLLSYP 447
I+ + G P KLV+GI GR+W L + D G P A G + G+++Y
Sbjct: 265 ISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAPTAAA---GTKQRKSNQIGVIAYA 321
Query: 448 EI 453
EI
Sbjct: 322 EI 323
>12_02_0234 - 16043995-16044894,16050069-16050200,16050278-16050718
Length = 490
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 23 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 148
LVR+ K + + NMQL + +LP Y V I DI
Sbjct: 381 LVRKAKDEMKTEENMQLRVDLLPLWREKPYIKVQRIFEACDI 422
>03_05_1021 -
29750155-29750220,29750342-29750428,29750614-29750799,
29750965-29751059,29751179-29751284,29751378-29751452,
29751548-29751679,29751782-29751961,29752371-29752567,
29752651-29752906
Length = 459
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 307 LVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAK 462
LV+G + T L E+SG+P D GP K+ L++ E+ K
Sbjct: 365 LVVGGWNSSNTSHLQEIGELSGIPSYWIDSEQRIGPGNKISYKLNHGELVEK 416
>12_02_0237 - 16087083-16087201,16087531-16088341,16097713-16098156
Length = 457
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 23 LVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDI 148
LVR+ K + ++ NMQL + +LP Y + I DI
Sbjct: 338 LVRKAKDEMMIEENMQLRVDLLPLWREKPYIKLQRIFETCDI 379
>08_02_0113 -
12715888-12716181,12717443-12717602,12718327-12718368,
12718443-12718465,12718616-12720653,12720736-12720965,
12722207-12722329,12722438-12723010,12724684-12724733,
12726828-12726923,12726987-12727394,12727609-12727795
Length = 1407
Score = 27.9 bits (59), Expect = 4.8
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = +2
Query: 62 NMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRD 241
++Q+++S P + F V + N + +V + A +T K+AD + Q R
Sbjct: 570 DLQILLSSGPY--EELNFGVEAAENALSVVKLIAILIFTVHNANKDADNQSYAEIVQRRV 627
Query: 242 PLQNA-DAAIKLLGFKMVR 295
LQNA AA + +G+ + R
Sbjct: 628 LLQNAFAAAFEFVGYLLKR 646
>12_02_0292 + 16979550-16980662,16983249-16983731
Length = 531
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 300 PQTCPWYQHHWTYVEARFR 356
P+ W QHHWT R R
Sbjct: 505 PEAKSWRQHHWTPARTRLR 523
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 191 PKEADYTAPIYAPQNRDPLQNADAAIK 271
P+ D + PIY P PL+N A++
Sbjct: 167 PQRPDSSVPIYTPPQTQPLRNLPPALR 193
>05_03_0191 - 9521496-9521921
Length = 141
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 288 WCAYPQTCPWYQHHWTYVEARFR 356
W P+ W++ HWT AR R
Sbjct: 119 WQRRPEAEKWWRRHWTPARARLR 141
>12_02_0362 +
17998110-17998345,17998877-17998958,18000309-18000392,
18000600-18000734,18001395-18001570,18001654-18001805,
18003730-18004575,18004961-18005301
Length = 683
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 406 LHHPYRRVSVELRKFHCLNRASTYVQW 326
+HHPY+ + +RKF A V W
Sbjct: 206 VHHPYKPLVEAIRKFKVAQNALAQVAW 232
>07_03_1383 + 26172329-26172448,26172770-26172961
Length = 103
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +1
Query: 190 PQRGGLHCTDLRTAEPRSSTKRRR 261
P RGG R A P SS +RRR
Sbjct: 10 PARGGTAAASARAAPPSSSRRRRR 33
>05_05_0393 -
24632570-24632629,24633212-24633370,24633496-24633612,
24633697-24633831,24634140-24634337,24634449-24634529,
24634845-24635141,24635231-24636013,24636589-24636765
Length = 668
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +2
Query: 218 IYAPQNRDPLQNADAAIKLLGFK--MVRLPTNLSLVSAPLDVRGSSIQTVKFPEFHRYT 388
+ AP +D + + ++++ K +R P N LVS ++ S++Q +KF ++ T
Sbjct: 57 VSAPLKKDASEVKRSKVEIIKEKSNFLRYPLNEELVSEAPNINDSAVQLIKFHGSYQQT 115
>02_05_0272 -
27348537-27348728,27349035-27349192,27349292-27349323,
27349420-27349514,27349614-27349687,27349800-27349878,
27350015-27350078,27350156-27350218,27350300-27350442,
27350566-27350703,27350792-27350913,27350993-27351158,
27351276-27351398,27351609-27351680,27351773-27351880,
27352481-27352597,27352727-27352865,27352974-27353080,
27353167-27353276,27353892-27354025,27354106-27354255,
27354329-27354549,27354647-27355318
Length = 1092
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Frame = +2
Query: 20 ALVREMKQALNV-KPN---MQLVISVLPNVNSSIYFDVPSI 130
AL ++A+N+ KP + L+I++LP+ N S+Y D+ I
Sbjct: 672 ALKARYQEAMNILKPQGGELDLLIAILPDNNGSLYGDLKRI 712
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,266,879
Number of Sequences: 37544
Number of extensions: 309280
Number of successful extensions: 826
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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