Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J12
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              47   1e-05
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              42   3e-04
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)            29   2.8  
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                28   4.9  
SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)                      28   4.9  
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   6.5  

>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 27/71 (38%), Positives = 39/71 (54%)
 Frame = +1

Query: 277 GIQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 456
           GI+NG P +K+VLG+ T GR + L+S            + G +AG YT  +G L+Y EIC
Sbjct: 644 GIRNGMPANKIVLGLGTYGRAFGLES----------AGNNGLDAGKYTGAKGFLAYFEIC 693

Query: 457 AKLINPNQNGK 489
              +   +N K
Sbjct: 694 KMGLTVVENNK 704


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 25/59 (42%), Positives = 36/59 (61%)
 Frame = +1

Query: 280 IQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 456
           I  G P++K+ LGI   GR++ L + ++    P   A KGG+ GPYTK  G ++Y EIC
Sbjct: 246 IAGGMPSNKIALGIPLYGRSFTLKTANKTLDAP---ATKGGQ-GPYTKEAGYIAYFEIC 300


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 24/59 (40%), Positives = 32/59 (54%)
 Frame = +1

Query: 280 IQNGAPTHKLVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEIC 456
           I  GAP  K+ LG+ T GR +KL +D    G+    A+     G YT+  G L+Y EIC
Sbjct: 359 IDKGAPASKIALGLGTYGRAFKL-ADQTRHGL-KAPANGNPTRGQYTREPGFLAYYEIC 415


>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
          Length = 184

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 409 GPYTKVQGLLSYPEIC 456
           GPYT+  G LSY EIC
Sbjct: 16  GPYTRESGFLSYYEIC 31


>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 628

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 279 DSKWCAYPQTCPWYQHHWTYVEA 347
           D + C+YP T PW    WT + +
Sbjct: 80  DERNCSYPTTGPWTTRPWTPISS 102


>SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)
          Length = 441

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -1

Query: 211 SVVRLFGVTFRCII--VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 38
           SV   F  T + +I  + C DV+ V  + +   V VNG     QNA+  + + F +   F
Sbjct: 252 SVENRFSGTNKALIDAIVCQDVEEVKSILETEAVNVNG-----QNAEGFVPLEFAVMLGF 306

Query: 37  HLTYKSGEAF 8
           H   K  +AF
Sbjct: 307 HHIAKMLQAF 316


>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 915

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 325 TTGRTWKLDSDSEISGVPPIHADKGGEAGPYT-KVQGLLSYPEI 453
           T G+TW      E  G+P + A  GG A P +  +  +LS  +I
Sbjct: 119 TAGKTWNASCFCEGRGMPLVGAVIGGAASPISLNIANVLSVNDI 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,406,420
Number of Sequences: 59808
Number of extensions: 354008
Number of successful extensions: 834
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)