Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J12
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 33 0.081
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 33 0.081
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 33 0.081
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 32 0.25
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 31 0.33
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 30 1.00
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 29 1.7
At5g42390.1 68418.m05161 metalloendopeptidase identical to chlor... 29 2.3
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 29 2.3
At4g34350.1 68417.m04881 LytB family protein contains Pfam profi... 28 3.0
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 27 7.0
At2g33570.1 68415.m04114 expressed protein 27 7.0
At2g14500.1 68415.m01623 F-box family protein contains F-box dom... 27 9.3
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 33.5 bits (73), Expect = 0.081
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 5 REGFTALVREMKQALNVKPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNIQAFDYYTP 181
RE +A+V E + KP + L +V + N S+ + V ++ + +D VN+ A+D+Y P
Sbjct: 156 REWRSAVVAEASSS--GKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFYGP 213
Query: 182 ERNPKEADYTAPIYAPQNRDPLQNA 256
+ + A ++ P N P +A
Sbjct: 214 GWS-RVTGPPAALFDPSNAGPSGDA 237
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 33.5 bits (73), Expect = 0.081
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 274 TGIQNGAPTHKL-VLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTK 423
TG G+ KL G ST G +W D S+ GV I+A GGE Y K
Sbjct: 244 TGTGTGSGAQKLEAQGNSTGGTSW--DDGSDYDGVTKIYASYGGEGIQYVK 292
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 33.5 bits (73), Expect = 0.081
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 274 TGIQNGAPTHKL-VLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTK 423
TG G+ KL G ST G +W D S+ GV I+A GGE Y K
Sbjct: 244 TGTGTGSGAQKLEAQGNSTGGTSW--DDGSDYDGVTKIYASYGGEGIQYVK 292
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 31.9 bits (69), Expect = 0.25
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Frame = +2
Query: 8 EGFTALVREMKQALNV------KPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNIQAF 166
+ F L+RE + A+ KP + L +V + + S+ V ++ + +D VN+ A+
Sbjct: 147 DNFGKLLREWRLAVEAEARSSGKPRLLLTAAVFYSYSYYSVLHPVNAVADSLDWVNLVAY 206
Query: 167 DYYTPERNPKEADYTAPIYAPQNRDPLQNADAAIKLLGFKMVRLPTNLSLVSAPL 331
D+Y + + AP+Y P P + DA ++ + LP +++ PL
Sbjct: 207 DFY-ESGSSRVTCSPAPLYDPITTGP--SGDAGVR--AWTQAGLPAKKAVLGFPL 256
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 31.5 bits (68), Expect = 0.33
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +2
Query: 8 EGFTALVREMKQALNVKPNMQLVISVLPNVNSSIYFDVPSIINLVDIVNIQAFDYYTPER 187
E + A V E N P + + + V +I + +D VNI A+D+Y P
Sbjct: 152 EEWRAAVVEESDKTNQLPLLLTAAVYYSPQYDGVEYPVKAIADNLDFVNIMAYDFYGPGW 211
Query: 188 NPKEADYTAPIYAPQN 235
+P A + P N
Sbjct: 212 SPVTGPPAALFHDPSN 227
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 29.9 bits (64), Expect = 1.00
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 32 EMKQALNVKPNMQLVISVL-PNVNSSIYFDVPSIINLVDIVNIQAFDYYTPERNPKEADY 208
E + + KP + L +V +V + + V + +D VNI A+D+Y P + K
Sbjct: 154 EAESRRSSKPTLLLTAAVYYSSVYKTFTYPVQVMRESLDWVNIIAYDFYGPVSSSKFTVP 213
Query: 209 TAPIYAPQNRDPLQNADAAIK 271
TA ++ N + + D+ +K
Sbjct: 214 TAGLHVSSNNEG-PSGDSGLK 233
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 280 IQNGAPTHKLVLGISTTGRTWKLDSDSE 363
I++G P K VLG S G W L +D +
Sbjct: 236 IKDGLPEKKAVLGFSYVGWAWTLQNDKD 263
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 113 FDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQN 235
+ V +I + +D VNI A+D+Y P +P A ++ P N
Sbjct: 179 YPVQAIADNLDFVNIMAYDFYGPGWSPVTGP-PAALFDPSN 218
>At5g42390.1 68418.m05161 metalloendopeptidase identical to
chloroplast processing enzyme metalloendopeptidase
[Arabidopsis thaliana] gi|2827039|gb|AAC39482
Length = 1265
Score = 28.7 bits (61), Expect = 2.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 169 VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 38
+K DVD + + ++ W N +Y+ + DN I IE +F
Sbjct: 358 IKKWDVDKIRKFHERWYFPANATLYIVGDIDNIPRIVHNIEAVF 401
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 28.7 bits (61), Expect = 2.3
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 92 NVNSSIYFDVPSIINLVDIVNIQAFDYYTP 181
N N +Y V I L+D VNI+A+D+Y P
Sbjct: 77 NYNGVVY-PVKFISELLDWVNIKAYDFYGP 105
>At4g34350.1 68417.m04881 LytB family protein contains Pfam profile:
PF02401 LytB protein
Length = 466
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = +1
Query: 307 LVLGISTTGRTWKLDSDSEISGVPPIHADKGGEAGPYTKVQGLLSYPEICAK 462
LV+G + T L SE G+P D GP K+ L Y E+ K
Sbjct: 372 LVVGGWNSSNTSHLQEISEARGIPSYWIDSEKRIGPGNKIAYKLHYGELVEK 423
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 280 IQNGAPTHKLVLGISTTGRTWKLDSDSE 363
I+ G P K VLG G TW L S ++
Sbjct: 231 IKAGLPAKKAVLGFPYVGWTWSLGSGND 258
>At2g33570.1 68415.m04114 expressed protein
Length = 496
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 251 FVEDRGSAVRKSVQCSPPLWGYVQVYNSQMPGC 153
++ + G+++R Q P WGY +VY + C
Sbjct: 147 WISNNGTSIRAKAQKILPDWGYGRVYTVVVVNC 179
>At2g14500.1 68415.m01623 F-box family protein contains F-box domain
Pfam:PF00646
Length = 347
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 299 PTNLSLVSAPLDVRGSSIQTVKFPEFHRYTPIRVVKLVLIPKSK 430
P L+L P D+ + + F +FHR T + K PK+K
Sbjct: 4 PNPLTLSELPHDLLRNIFNRLSFADFHRATWNSISKQTAPPKTK 47
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,533,769
Number of Sequences: 28952
Number of extensions: 248278
Number of successful extensions: 693
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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