Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J11
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    27   1.5  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   2.5  
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   2.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   4.5  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   4.5  
SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25 |Sch...    25   7.8  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   7.8  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    25   7.8  

>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 103 DDDYWNTSETKDKAFNFDDDL 165
           D +Y N +E   K  NFDDDL
Sbjct: 174 DQEYMNEAELPIKDMNFDDDL 194


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 389  NVTATVSVDSCLISFDKSLPDCARRIKSNTLDETR 285
            N+  TV+   C++    ++ DC R+++   LD  +
Sbjct: 2554 NIFPTVTTIPCVVKLQGTVEDCLRQLQKFNLDANK 2588


>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 206

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 407 PKINLFNVTATVSVDSCLISFDKSLP 330
           PK+N+ +  A   +DS L S D+S P
Sbjct: 135 PKVNISHAEAEEDIDSFLESMDQSAP 160


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 242  PTLVQSKLHNYRYTALSRLKYWI*FFLHSQVKTYQRKLNM 361
            P ++ SK+  Y +     L  W   F H +  TY  KL++
Sbjct: 1307 PFVMVSKMEKYEHALRVYLLVWDLIFYHFEETTYNIKLSI 1346


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 250 SAVKTAQLPLHSLVSSKVLDLILLAQSGKDLSKEIKHESTDTVAVTLKRLILGRNCS 420
           S   T+ +PLHS + +        +     +S  +    ++ V+ TL+RL+   NCS
Sbjct: 11  SLFDTSFVPLHSSIPATSKMSASNSDVNAPISPVVDEGKSELVSPTLERLVAPFNCS 67


>SPBC32C12.03c |ppk25||serine/threonine protein kinase Ppk25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 407 PKINLFNVTATVSVDSC-LISFDK-SLPDCARRIKSNTLDETRLCNGSCAVLTALML 243
           P+++++++   + V  C  + FD  S+P    +IKS  L+     +  C  L A ML
Sbjct: 230 PEVDVWSLGVVIYVMVCGRVPFDDVSVPMLHSKIKSGKLEFPSYISEDCCSLIAAML 286


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 392 FNVTATVSVDSCLISFDKSLPDCARRIKSNTLDETRLC 279
           F+ + T + D+ L    +SL +  +++ SN  +ETRLC
Sbjct: 418 FSGSETNNKDNSLSVDFRSLIEVLQKLLSNDNEETRLC 455


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 226 GVFSSANISAVKTAQLPLHSLVSSKVLD 309
           GV   A +S+V    +PLH   SS +LD
Sbjct: 148 GVEIVAFVSSVGKIAIPLHETASSAILD 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,880,554
Number of Sequences: 5004
Number of extensions: 35954
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)