Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J11
(474 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 29 1.4
04_04_1030 - 30249160-30250403,30250787-30251666 29 1.4
10_01_0071 - 905696-909028 29 2.5
03_02_0352 + 7749902-7751788,7752547-7752615 29 2.5
06_02_0324 + 14414422-14414541,14415271-14415347,14415807-144159... 28 3.3
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 28 4.4
05_01_0411 + 3243025-3243092,3243348-3243496,3243740-3243872,324... 27 5.8
04_03_1024 - 21801411-21801725,21801881-21801989,21802200-218023... 27 5.8
02_04_0544 - 23768808-23768910,23769005-23769030,23769379-237694... 27 5.8
09_06_0022 - 20291787-20291864,20291989-20292010,20292269-202932... 27 7.7
07_03_0752 - 21241883-21242233,21242336-21242486,21242586-212428... 27 7.7
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +1
Query: 94 TMDDDDYWNTSETKDKAFNFD---DDLLSPQEILAIGKKSFPGQNEGGV 231
T + +D++ TSE+ ++ NF+ DD+ SP+ A ++S G GGV
Sbjct: 186 TQEMNDHFGTSESSAESSNFESSTDDVSSPKR--AKAERSVAGNKTGGV 232
>04_04_1030 - 30249160-30250403,30250787-30251666
Length = 707
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +1
Query: 115 WNTSETKDKAFNFDDDLLSPQEILAIGKKSFPGQNEGGVFSSANISAVKTAQLPLHSLVS 294
+ TSE +D NF DD + +G+ + G G+ S I A+K ++L S +
Sbjct: 349 FTTSELEDATNNFSDDRI-------VGRGGY-GTVYKGILSDQTIVAIKKSKLVDQSQME 400
Query: 295 SKVLDLILLAQ 327
+ +LI+L+Q
Sbjct: 401 QFINELIVLSQ 411
>10_01_0071 - 905696-909028
Length = 1110
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +1
Query: 268 QLPLHSLVSSKVLDLILLAQSGKDLSKEIKHESTDTVAVTLKR--LILGRNCSLHV-HRS 438
+L ++ +S L+ L G+ S + E VA R L NC H+ HR
Sbjct: 893 RLLVYEFMSHGSLEDTLHGDGGRSASPAMSWEQRKKVARGAARGLCFLHYNCIPHIIHRD 952
Query: 439 LKSKTELLDG 468
+KS LLDG
Sbjct: 953 MKSSNVLLDG 962
>03_02_0352 + 7749902-7751788,7752547-7752615
Length = 651
Score = 28.7 bits (61), Expect = 2.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 139 KAFNFDDDLLSPQEILAIGKKSFPG 213
+ FNFD ++ P++ L IG + PG
Sbjct: 479 RKFNFDGNVCQPEDTLMIGNEEVPG 503
>06_02_0324 +
14414422-14414541,14415271-14415347,14415807-14415994,
14416276-14416373,14416633-14416766,14416852-14416953,
14417931-14418038,14418335-14418465,14420068-14420142,
14420439-14420518,14421229-14421320,14422333-14422634,
14422717-14422856
Length = 548
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 334 KDLSKEIKHESTDTVAVTLKRLILGRNCSLHVHRSLKSKTELL 462
+D ++E + ST V V L+ +GR L HRS S ++ L
Sbjct: 451 RDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQAL 493
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 91 ITMDDDDYWNTSETKDKAFNFDDDLLSPQEILAIGKKSFPGQNEGGVFSSANISAV 258
++ +DDD W T K+K+ P E+ AI F GQ + V ++ N ++V
Sbjct: 463 VSSNDDDAWETVGKKNKSAIMRSQSFVPSELTAI----FGGQLQSCVKATGNKASV 514
>05_01_0411 +
3243025-3243092,3243348-3243496,3243740-3243872,
3244740-3244860,3245065-3245181,3245303-3245389,
3245941-3246000,3246097-3246174,3246587-3246658,
3246767-3246925
Length = 347
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 449 LLFKLRWTCNEQFLPKINLFNVTATVSVDSCLISFDKSL 333
L F++R +E+F + N + T T+S+ L+ F+K++
Sbjct: 244 LKFRIRTAPHERFRREGNDLHTTVTISLLQALVGFEKTI 282
>04_03_1024 -
21801411-21801725,21801881-21801989,21802200-21802375,
21802489-21802571,21803228-21803279
Length = 244
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 97 MDDDDYWNTSETKDKAFNFDDDLLSPQE 180
+DDDD + +E D ++F+DD S E
Sbjct: 14 VDDDDLLDDNEDDDDDYSFEDDFESDDE 41
>02_04_0544 -
23768808-23768910,23769005-23769030,23769379-23769497,
23769542-23769668,23769842-23769905,23769981-23770095,
23770867-23771101,23771196-23771382,23771948-23772305,
23772432-23772465
Length = 455
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +1
Query: 241 ANISAVKTAQLPLHSLVSSKVLDLIL--LAQSGKDLSK 348
ANI+A TA P HS S+ V D + LA +G ++SK
Sbjct: 390 ANIAAKPTAYRPPHSKNSADVQDKLFGGLASTGGEMSK 427
>09_06_0022 -
20291787-20291864,20291989-20292010,20292269-20293218,
20293339-20293629
Length = 446
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/47 (29%), Positives = 29/47 (61%)
Frame = +1
Query: 211 GQNEGGVFSSANISAVKTAQLPLHSLVSSKVLDLILLAQSGKDLSKE 351
G + G + S+V++ ++P+HSLVS + L + A++G D+ ++
Sbjct: 400 GPDRAGSDQDGSSSSVRSIRMPVHSLVSFTSV-LGVSAKNGGDIGRK 445
>07_03_0752 -
21241883-21242233,21242336-21242486,21242586-21242823,
21242917-21243127,21243214-21243344,21245046-21245931,
21246087-21246140,21246397-21246461,21246842-21246892,
21246960-21247029,21247493-21247597
Length = 770
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 142 LYL*FHLCSSNHRHPW**LNCTNCFTLLHKN 50
+ L H C S + P LNCT+C LLHK+
Sbjct: 15 IILLLHGCMSG-KSPSGILNCTHCSVLLHKS 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,453,350
Number of Sequences: 37544
Number of extensions: 206915
Number of successful extensions: 518
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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