Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J11
         (474 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)                      36   0.013
SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09)                33   0.16 
SB_9818| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.85 
SB_18365| Best HMM Match : EGF (HMM E-Value=0.00021)                   30   0.85 
SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_54973| Best HMM Match : RVP (HMM E-Value=2.6)                       29   2.0  
SB_41335| Best HMM Match : EGF (HMM E-Value=0.0035)                    29   2.0  
SB_13099| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09)                 28   3.4  
SB_50525| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_49545| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.0  
SB_49120| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-08)          27   6.0  

>SB_27157| Best HMM Match : CLPTM1 (HMM E-Value=0)
          Length = 1264

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 18/33 (54%), Positives = 24/33 (72%)
 Frame = +1

Query: 376  VAVTLKRLILGRNCSLHVHRSLKSKTELLDGAV 474
            VA ++KR+I G   SL +++SLK K ELLD AV
Sbjct: 1017 VAESIKRIIRGEPYSLELYKSLKEKVELLDVAV 1049


>SB_8285| Best HMM Match : Filamin (HMM E-Value=1.1e-09)
          Length = 474

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +1

Query: 238 SANISAVKTAQ-LPLHSLVSSKVLDLILLAQSGKDLSKEIKHESTDTVAVTLKRLILGRN 414
           + NI + +  + LP  SL++S VLD++ L   GK +  +I  +S  + AV+  +      
Sbjct: 60  AVNIKSPRDVEDLPCDSLLNS-VLDMVAL-HGGKQIMCDICDDSEQSTAVSRCKQCATYF 117

Query: 415 CSLHVHRSLKSK 450
           CSLH H    SK
Sbjct: 118 CSLHGHAHKTSK 129


>SB_9818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 193 GKKSFPGQNEGGVFSSANISAVKTAQLPLHSLVSSKVLDLIL 318
           GKK  P  N+GG FS AN +    + L + SLV +   +L++
Sbjct: 19  GKKQKPVVNDGGEFSFANFNEHLNSYLEVQSLVKTMEPNLMM 60


>SB_18365| Best HMM Match : EGF (HMM E-Value=0.00021)
          Length = 188

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 193 GKKSFPGQNEGGVFSSANISAVKTAQLPLHSLVSSKVLDLIL 318
           GKK  P  N+GG FS AN +    + L + SLV +   +L++
Sbjct: 17  GKKQKPVVNDGGEFSFANFNEHLNSYLEVQSLVKTMEPNLMM 58


>SB_51975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +1

Query: 217 NEGGVFSSANISAVKTAQLP--LHSLVSSKVLDLILLAQSGKDLSKEIKHESTDTVAVTL 390
           NE G+      S +K A  P  L+SL S++ ++ IL +Q+GKD+ + +K      V V L
Sbjct: 310 NETGILKE---SFLKVALQPEYLNSL-SNETIE-ILKSQTGKDVPQIVKDTLVANVGVPL 364

Query: 391 KRLILG 408
           K LI G
Sbjct: 365 KALISG 370


>SB_54973| Best HMM Match : RVP (HMM E-Value=2.6)
          Length = 255

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 154 DDDLLSPQEILAIGKKSFPGQNEGGVFSSANISAVKTAQLPLHSLVSSKVLDLIL 318
           DD+L     I+      F  QN G    + N+S + T  L LH  +S   +DL++
Sbjct: 146 DDNLPEINTIINTSNSHFGNQNNG-TDVTVNVSFLTTDNLMLHGQISGHDIDLLV 199


>SB_41335| Best HMM Match : EGF (HMM E-Value=0.0035)
          Length = 154

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 193 GKKSFPGQNEGGVFSSANISAVKTAQLPLHSLVSSKVLDLIL 318
           GKK  P  N+GG FS AN +    + L + +LV +   +L++
Sbjct: 17  GKKQKPVVNDGGEFSFANFNEHLNSYLEVQALVKTMEPNLMM 58


>SB_13099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 193 GKKSFPGQNEGGVFSSANISAVKTAQLPLHSLVSSKVLDLIL 318
           GKK  P  N+GG FS AN +    + L + +LV +   +L++
Sbjct: 17  GKKQKPVVNDGGEFSFANFNEHLNSYLEVQALVKTMEPNLMM 58


>SB_39353| Best HMM Match : 7tm_3 (HMM E-Value=3.2e-09)
          Length = 836

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 340 LSKEIKHESTDTVAVTLKRLILGRNCSLHVHRSLKSKTELL 462
           LS+EI H S D  AVT    I       HV+ S ++  E +
Sbjct: 89  LSREITHVSCDATAVTSNAYIAASEKIFHVNPSERTSVEAI 129


>SB_50525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 281 TALSRLKYWI*FFLHSQVKTYQRKLNMNLLTQLQ*H*RD*SWVET 415
           T L+   Y I    H Q   Y+R+LN+ + T L+    D +W+ T
Sbjct: 100 TPLTNSCYAIHLSTHPQTHLYKRQLNVLIFTPLKKSQVDLTWIRT 144


>SB_49545| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 193 GKKSFPGQNEGGVFSSANISAVKTAQLPLHSLVSSKVLDLIL 318
           G+K  P  N+GG FS AN +    + L + +LV +   +L++
Sbjct: 17  GEKQKPVVNDGGEFSFANFNEHLNSYLEVQALVKTMEPNLMM 58


>SB_49120| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-08)
          Length = 401

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 193 GKKSFPGQNEGGVFSSANISAVKTAQLPLHSLVSSKVLDLIL 318
           G+K  P  N+GG FS AN +    + L + +LV +   +L++
Sbjct: 17  GEKQKPVVNDGGEFSFANFNEHLNSYLEVQALVKTMEPNLMM 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,610
Number of Sequences: 59808
Number of extensions: 262337
Number of successful extensions: 701
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)