Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_J11
(474 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55363-6|AAA97964.1| 522|Caenorhabditis elegans Defective sperm... 36 0.011
Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 28 3.9
AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein. 27 5.2
AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic avoid... 27 5.2
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 27 6.9
AF022980-11|AAG24189.1| 330|Caenorhabditis elegans Serpentine r... 27 6.9
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 27 9.1
U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical pr... 27 9.1
AL021503-1|CAA16420.2| 309|Caenorhabditis elegans Hypothetical ... 27 9.1
>U55363-6|AAA97964.1| 522|Caenorhabditis elegans Defective
spermatogenesis protein39, isoform a protein.
Length = 522
Score = 36.3 bits (80), Expect = 0.011
Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +1
Query: 334 KDLSKEIKHESTD--TVAVTLKRLILGRNCSLHVHRSLKSKTELLDGAV 474
KD + ++HE T+ ++KR++ G +L +RSL+ KT+LL AV
Sbjct: 154 KDQHEVLRHERFQPLTIEASIKRMLQGHTVTLDYYRSLRDKTQLLKQAV 202
>Z81573-2|CAB04626.1| 294|Caenorhabditis elegans Hypothetical
protein M02G9.3 protein.
Length = 294
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 222 RWCIQFCQH*CSQNCTT-TVTQPCLV*SIGFDSSCT 326
R C CQ+ CS CTT T Q C +G +SC+
Sbjct: 174 RNCQNSCQNQCSSACTTMTCRQTCQNTCLGSCNSCS 209
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 228 CIQFCQH*CSQNCTTTVTQPCLV*SIGFDSSCT 326
CIQ CQ C Q C T C+ SSCT
Sbjct: 209 CIQSCQSSCQQACQPTCQPQCMP---SCSSSCT 238
>AF314195-1|AAK01173.1| 820|Caenorhabditis elegans OSM-5 protein.
Length = 820
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 100 DDDDYWNTSETKDKAFNFDDDLLSPQEILAIGKKS 204
DDDD++ ++ DKA++ + +PQ A+ + S
Sbjct: 9 DDDDFYGGFDSYDKAYDIQNITQNPQFQQAVARSS 43
>AC006761-7|AAF60551.2| 820|Caenorhabditis elegans Osmotic
avoidance abnormal protein5 protein.
Length = 820
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 100 DDDDYWNTSETKDKAFNFDDDLLSPQEILAIGKKS 204
DDDD++ ++ DKA++ + +PQ A+ + S
Sbjct: 9 DDDDFYGGFDSYDKAYDIQNITQNPQFQQAVARSS 43
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 225 WCIQFCQH*CSQNCTTTVTQPC 290
+C+ CQ+ C QNC V +PC
Sbjct: 825 FCLPACQNACQQNCPLQV-EPC 845
>AF022980-11|AAG24189.1| 330|Caenorhabditis elegans Serpentine
receptor, class j protein49 protein.
Length = 330
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 224 VVYSVLPTLVQSKLHNYRYTALSRLK 301
++YSV+ L+Q +H+YRY LK
Sbjct: 52 MIYSVMNFLIQIDIHSYRYCFFLFLK 77
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +1
Query: 112 YWNTSETKDKAF--NFDDDLLSPQEILAIGKKSFPGQNEGGVFSSANISAVKTAQLPLHS 285
+W T+ K++ + DDL+ + + G S G G+F + S +K +P+ +
Sbjct: 638 HWKTTTCKEEDMKDSMRDDLMDIKGEIDEGSMSGSGYGNLGIFENTLNSELKRPLMPIET 697
Query: 286 LVSSKVL-DLILLAQSGKDLSKE 351
+ S L + LL Q + ++
Sbjct: 698 IYSKYNLPNASLLGQGPSGMQEQ 720
>U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical
protein F21F3.1 protein.
Length = 350
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/62 (19%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 91 ITMDDD-DYWNTSETKDKAFNFDDDLLSPQEILAIGKKSFPGQNEGGVFSSANISAVKTA 267
+T+D++ DYW T + D + + ++++G+K PG+++ +++ K
Sbjct: 130 LTIDNNGDYWVTDVGSHQVHKIDAK--TQKIVMSLGEKMVPGEDQAHFCKPTDVAVAKNG 187
Query: 268 QL 273
+
Sbjct: 188 HI 189
>AL021503-1|CAA16420.2| 309|Caenorhabditis elegans Hypothetical
protein Y68A4A.2 protein.
Length = 309
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 159 IVKIKGFIFSFTCVPVIIVIHGNSSIVQIVL 67
+VK+ +F C I+V++ NSS + IVL
Sbjct: 71 MVKVSYLVFVSACFNFILVVNINSSQINIVL 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,495,316
Number of Sequences: 27780
Number of extensions: 203634
Number of successful extensions: 637
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -