Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J11
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   6.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 304 LDLILLAQSGKDLSKEIKHESTDTVAVTLKRLILGRNC 417
           LDL L  ++G D+S  I +   D + V  KR  +  NC
Sbjct: 176 LDLQLQDEAGGDISSFITNGEWDLLGVPGKRNEIYYNC 213


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 100 DDDDYWN 120
           D DDYWN
Sbjct: 526 DSDDYWN 532



 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 419 EQFLPKINLFNVTATVSVDSCLISFDKSLPD 327
           E FL  +N F  T+ V  + C       +PD
Sbjct: 36  ELFLALLNFFVATSPVIGEPCQRVHSSRIPD 66


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 389 NVTATVSVDSCLISFDKSLP 330
           NVT  +S+D+   + D SLP
Sbjct: 505 NVTNILSMDNTQYNLDLSLP 524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,873
Number of Sequences: 438
Number of extensions: 2397
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)