Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_J11
         (474 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23490.1 68417.m03384 fringe-related protein  + weak similari...    30   0.70 
At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar t...    29   1.2  
At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide pyr...    29   2.1  
At2g27010.1 68415.m03243 cytochrome P450 family protein similar ...    29   2.1  
At1g05180.2 68414.m00521 auxin-resistance protein AXR1 (AXR1) id...    28   3.7  
At1g05180.1 68414.m00522 auxin-resistance protein AXR1 (AXR1) id...    28   3.7  
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3...    27   4.9  
At5g19060.1 68418.m02266 expressed protein ; expression supporte...    27   8.6  

>At4g23490.1 68417.m03384 fringe-related protein  + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 526

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 115 WNTSETKDKAFNFDDDLLSPQEILAIGKKSFPGQNEGGVFSSANISAVKTAQLPL 279
           W   E K    + DD+ L P   ++ G  SFP  N+ G  S+  IS + +  L L
Sbjct: 146 WLDKEVKKSLSDDDDEKLLPPVKISGGTASFPYTNKQGQRSALRISRIVSETLRL 200


>At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar to
           SP|P14133 L-ascorbate oxidase precursor (EC 1.10.3.3)
           (Ascorbase) {Cucumis sativus}; contains Pfam profile
           PF00394: Multicopper oxidase
          Length = 582

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 292 SSKVLDLILLAQSGKDLSKEIKHESTDTVAVTLKRLILGRNCSLHVHRSLKSKTELLDG 468
           S    + +++  +GK     IK +  DT+ V LK   +  N ++H H   +  T   DG
Sbjct: 48  SPDCFEKLVITINGKFPGPTIKAQQGDTIVVELKNSFMTENVAVHWHGIRQIGTPWFDG 106


>At4g29700.1 68417.m04230 type I phosphodiesterase/nucleotide
           pyrophosphatase family protein similar to SP|P22413
           Ectonucleotide pyrophosphatase/phosphodiesterase 1
           (Plasma-cell membrane glycoprotein PC-1) [Includes:
           Alkaline phosphodiesterase I (EC 3.1.4.1); Nucleotide
           pyrophosphatase (EC 3.6.1.9) {Homo sapiens}; contains
           Pfam profile PF01663: Type I phosphodiesterase /
           nucleotide pyrophosphatase
          Length = 461

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 446 LFKLRWTCNEQFLPKINLFNVTATVSVDSCLISFD 342
           + K  WTC E + P  NL +V     VDS L  FD
Sbjct: 170 VLKSSWTCPEGYCPHFNL-SVPLEERVDSVLSHFD 203


>At2g27010.1 68415.m03243 cytochrome P450 family protein similar to
           Cytochrome P450 93A1 (SP:Q42798)  {Glycine max};
          Length = 498

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
 Frame = +1

Query: 190 IGKKSFPGQNEGGV------FSSANISAVKTAQLPLHSLVSSKVLDLILLAQSGKDLSKE 351
           +  + FP  NEG +      F +A  S +K ++    S+  S  L+L  L ++ K  S E
Sbjct: 100 VSSRDFP-TNEGSLLFGSFGFGTAPSSGLKHSRGHKKSVQRSYYLNL--LDKAVKKESVE 156

Query: 352 IKHESTDTVAVTLKRLILGRNCS 420
           I  E+   V  T+ ++I+GR+CS
Sbjct: 157 IAEEAMKLVNNTVCQMIMGRSCS 179


>At1g05180.2 68414.m00521 auxin-resistance protein AXR1 (AXR1)
           identical to SP|P42744 Auxin-resistance protein AXR1
           {Arabidopsis thaliana}; contains Pfam profile PF00899:
           ThiF family; identical to cDNA  ubiquitin activating
           enzyme E1-related protein (AXR1) GI:304103
          Length = 436

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
 Frame = +1

Query: 97  MDDDDYWNTSETKDKAFNFDDD---------LLSPQEILAIGKKSFPGQNEGGVFSSANI 249
           M +D++ N S T+ + +  D+D         LL   +  A     FPGQ +GG+    +I
Sbjct: 298 MVEDEFRNPSVTEIQKYLADEDYSGAMGFYILLRAADRFAANYNKFPGQFDGGM--DEDI 355

Query: 250 SAVKTAQLPL 279
           S +KT  L L
Sbjct: 356 SRLKTTALSL 365


>At1g05180.1 68414.m00522 auxin-resistance protein AXR1 (AXR1)
           identical to SP|P42744 Auxin-resistance protein AXR1
           {Arabidopsis thaliana}; contains Pfam profile PF00899:
           ThiF family; identical to cDNA  ubiquitin activating
           enzyme E1-related protein (AXR1) GI:304103
          Length = 540

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
 Frame = +1

Query: 97  MDDDDYWNTSETKDKAFNFDDD---------LLSPQEILAIGKKSFPGQNEGGVFSSANI 249
           M +D++ N S T+ + +  D+D         LL   +  A     FPGQ +GG+    +I
Sbjct: 402 MVEDEFRNPSVTEIQKYLADEDYSGAMGFYILLRAADRFAANYNKFPGQFDGGM--DEDI 459

Query: 250 SAVKTAQLPL 279
           S +KT  L L
Sbjct: 460 SRLKTTALSL 469


>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein    (RHD3) family
          Length = 834

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = -2

Query: 461 NNSVLLFKLRWTCNEQFLPKINLFNVTATVSVDSCLISFDKSLPDCARRIKSNTLDETRL 282
           +N++  FK+R    EQ L +   F      S  SCL+ FDK   D A  +K  T D +++
Sbjct: 379 SNALESFKIRL---EQSLNQGEGFAKAVRDSQQSCLMVFDKGCEDAA--VKQATWDASKI 433

Query: 281 CNGSCAVLTA 252
               C  + A
Sbjct: 434 REKLCRDIDA 443


>At5g19060.1 68418.m02266 expressed protein ; expression supported
           by MPSS
          Length = 551

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 236 VLPTLVQSKLHNYRYTALSRLKYWI 310
           V+P+L  S LH +R +AL+ L +++
Sbjct: 6   VIPSLAMSPLHQWRLSALTSLVFFL 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,640,090
Number of Sequences: 28952
Number of extensions: 181244
Number of successful extensions: 522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)